Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10130 471 4e-128 seq483 120 3e-22 seq348 98.7 1e-15 seq9909 95.1 1e-14 >seq10130 Length=961328 Score = 471 bits (522), Expect = 4e-128 Identities = 1058/1576 (67%), Gaps = 56/1576 (4%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||||| | || || | | || || | ||| |||||||||| ||| || | Sbjct 296338 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCC 296279 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 | || || | |||||| || | | || | |||||||||||||||| ||||| | Sbjct 296278 GGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 296219 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 |||| | || ||||||||| || | |||||| ||| | || ||| | | Sbjct 296218 CGGTGGAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGA 296159 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTC 148468 | || |||||| | ||||||||| || ||| | || ||| | ||||||||| Sbjct 296158 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTG--GGGGTCTTCTCCCACATGTC 296101 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||||| || | || ||||| |||| ||||||||||| ||| || || || | Sbjct 296100 GTACTGGAGCACCCCCCGGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTC 296041 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 ||||||||| |||||||| ||||| |||||| ||| ||| || |||||| || || Sbjct 296040 CGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGAC 295981 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 |||||||||| |||| |||| ||| |||| |||| | | | || |||||||| Sbjct 295980 GTTGAGCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGC 295921 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708 || ||||| ||||| | ||| ||||||||||| ||||||| |||| || ||| Sbjct 295920 CAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGA---GCGCTCGGCCTC 295864 Query 148709 ---GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765 || ||| |||| ||| ||||||| ||||| || || ||| | |||||| || Sbjct 295863 GGGGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGT 295804 Query 148766 AATTCTGCG--CAGCAATTCAAAATCGTACTTGTCATCT--------ACGATGCATCGGT 148815 | | ||| |||| | || ||| | ||| || ||| | ||| || Sbjct 295803 GA--CGGCGGCCAGCTTCTTGAAGTCGAA--GGTCCGCTCGGGCGTGACG-TACAT--GT 295751 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 | | |||||| ||||| || ||||| |||||| ||| ||| | | || |||| || | Sbjct 295750 TGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCA 295691 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 ||||| ||| || |||||||| ||||| ||||| ||||| || |||||||||| || Sbjct 295690 CCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGT 295631 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG- 148994 |||| ||||||||||| |||||||| || ||| || ||| ||||| || | ||| Sbjct 295630 TGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGG 295571 Query 148995 -----AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGT 149049 || | ||| || ||| | | ||| | || | | || |||||| ||||| Sbjct 295570 CGTACCACAGCTGCTGGGCCTTCAC---CACCTTCTTCAC---CCGCCCCTCCGCCTCGT 295517 Query 149050 ATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGT 149109 | || || ||| ||||||| |||| || |||| ||||| || ||||| |||| | Sbjct 295516 ACTTTGTGTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGC 295457 Query 149110 GCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCA 149169 || ||||| || ||||| | || | ||| ||| |||| ||||| ||||| | Sbjct 295456 TGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGA 295397 Query 149170 CCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGC 149228 ||| || |||| | |||||| | ||| || | || || |||| |||| | Sbjct 295396 TCCACAGGCCGTAGAAGAGGTCCCTGGCC-CGCTGCTCCTCCTTGCCCGTGTTCTTCTTC 295338 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC- 149287 || | || | | ||| | ||| |||||||||||| | ||||| |||| ||||| Sbjct 295337 AGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCG 295278 Query 149288 -----CTTGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACC 149342 |||| |||||||||||||| |||| ||| | ||||||| | || || | | Sbjct 295277 GGCCTCTTG---TTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGC 295221 Query 149343 ATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGC 149402 || || | | ||| ||| ||||||| || | ||| ||||| || || Sbjct 295220 ATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGG 295161 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCG 149462 | | ||| ||||||||||||||| | |||| |||||| ||||| | | Sbjct 295160 ATGCAGCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTG 295101 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 ||||| |||||||||||||||||||||| |||||||| |||||| ||||| | || Sbjct 295100 AGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGAC 295041 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||||| |||||||| ||| | || || |||||| || || | ||| Sbjct 295040 AGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTC 294981 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 | || || | ||||| ||||| || ||| ||||| ||| ||||| || | Sbjct 294980 TCCGACAGCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACC 294921 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGC 149699 | |||||||| ||||| |||||||| ||||| ||||| || ||| || || ||| Sbjct 294920 GACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTT---GATCTTCAGC 294864 Query 149700 AAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGG 149759 | |||| | || || |||||| |||| ||| | |||||| ||||||||| || | Sbjct 294863 AGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAG 294804 Query 149760 TCAATGGCGGCGTCGA 149775 ||||||| || || Sbjct 294803 ATGATGGCGGAGTTGA 294788 >seq483 Length=217099 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 215591 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 215649 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| |||||||| |||||| | Sbjct 215650 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTT 215709 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| | |||||||| || | ||||| ||| ||||| || || | Sbjct 215710 TCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGG 215769 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 215770 TCTTGACAAAGATCTGCATG 215789 >seq348 Length=361584 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 109454 ATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 109513 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || ||| || ||||| | |||||||||| ||| ||||| |||| ||||| Sbjct 109514 GCGGCGAACGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCCACCACACGCTC 109572 >seq9909 Length=2276304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||||| ||| || | ||||||||||||| | ||||| ||||| || | || | Sbjct 1378311 TGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 1378252 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || |||| |||||||| ||||||||||| ||||||||||| Sbjct 1378251 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1378212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483359284703200