Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq9958 123 3e-23 >seq9958 Length=1759816 Score = 123 bits (136), Expect = 3e-23 Identities = 545/847 (64%), Gaps = 27/847 (3%) Strand=Plus/Plus Query 162169 AGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGC--TGCACGGCGGAT 162226 || ||||| | |||| |||| || |||| | | | || | ||| | ||||||| | Sbjct 1379676 AGGTCCCCAGCTCCGTACACACAGACGG--CTCTCCTGTAGGCCCCCGTGCACGGGTAGT 1379733 Query 162227 ACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAG 162286 | | || || | || ||| ||||| | ||| |||||| ||| || | || || Sbjct 1379734 AAGGAGCTCCTTTGTTCACGTCCCCTGCTAGGTAAGACCACTTGACGGCCCGGGCGAGAG 1379793 Query 162287 CCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCA 162346 |||||||||| || | ||| ||| || ||| | | ||| |||||| |||| Sbjct 1379794 CCTGCATGTCCGACACTTGGTATTTGCTGTTTGCGGGCGCCGATCCGGGAACAGAAGGCA 1379853 Query 162347 GTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCA 162406 ||||| || || ||||||| ||| |||||||| || ||||| |||||| |||||||| Sbjct 1379854 TCCTCTGAAGCGTGGCCCACATGTGCTCGTCTGGGCTGTACGTGTCCTTCTCCCACTCCA 1379913 Query 162407 TGAACTCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAA 162466 |||| | | || | | | | | ||| || ||| ||| | || | || Sbjct 1379914 TGAAGTTCTGCGCCTCTCTGTTCCGCACCACGTATTTCACAAAGGCCCTCGAGACCACAA 1379973 Query 162467 AGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGG-GGGCTCTTTGTCTTGACCC 162525 |||||||| | || || |||| ||| ||| || || || |||||||| ||| | | Sbjct 1379974 AGTACGCGTTTCCCGAGAACATGGGGGTGCTGATGGGCGGCGGGCTCTTCCTCTCGCC-- 1380031 Query 162526 GTGTTGACTACC--ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATC-TTA 162582 || | || || || |||| ||| | | |||| | | | || || Sbjct 1380032 ----TGTCCCCCGGATGGTGTCGGTGACCTCGTAG-TGGTACTCC--CAG--CGTCGTTT 1380082 Query 162583 CTGGTAGACG--GGT--GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTG 162638 || || | | ||| ||||||||||||| ||||| | || | | ||||| Sbjct 1380083 CTTGTGGCTGCTGGTTTGTTCGGTCTCTAGGCTGTTCCTCCCGTTGAGGAATTTCAGAGC 1380142 Query 162639 ACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATA 162698 ||||||||| ||||| || | ||||||||| || || ||| || | || || Sbjct 1380143 CATCACCATCTCCCTGTTGGTTTTGATGGGAAAGTCTGTCCCACAGGTGTTCAGAAGGTA 1380202 Query 162699 TTTCCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGC 162757 | |||| | ||| | || | | ||| || | | |||||||| || ||||| || | Sbjct 1380203 TCTCCATTGGACGTCGGATTGC-AGCAGGTCGTTCATGCAGTTCAGGTCTGCCTGCACTC 1380261 Query 162758 GACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAAC 162817 | |||||| |||||||| || || || || | | | | ||||||||| || | Sbjct 1380262 GGGACCACGAAGCGTACACCACTCTTTCTAATTTGCTAGATATGAAGACATTGGGAAAGC 1380321 Query 162818 ACGAAACTATCCCCATCACGGCCAGTGAGAACAT-CGGGTCCGCTTTCCTATCTACGTGT 162876 | |||||||| | || ||| || ||| || ||| | ||| || ||||| Sbjct 1380322 AGGAAACTATGTTCTGAACAGCC-CTGTGAAAATCCGGAGAAGACTTCTGGTCAACGTGC 1380380 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 || ||||| | || ||||| ||||| || | | ||| | || || |||||||| ||| Sbjct 1380381 ACACAGTACACGTTTTGAGGAGCGTAAATAGATCGCAGGAGTCGTTCAAACATCTCGATC 1380440 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGAC 162996 |||| ||| | ||| || || | || || || || | |||||||| ||| |||| | Sbjct 1380441 TTATTGTGGATCACCATGGAGAATGCAATAGGAAAATTTGCCTCCTCCTCACTAAGAGGC 1380500 Query 162997 CCTGTAA 163003 | |||| Sbjct 1380501 ACCGTAA 1380507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578358394528000