Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq483 89.7 3e-13 seq10111 84.2 1e-11 >seq483 Length=217099 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 215562 CCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 215621 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 215622 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 215681 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||||| ||| || | ||||||||| | ||||| Sbjct 215682 ATGCCCTCCTTGTCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCGCTAGGCTCCAC 215740 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 215741 CTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 215788 >seq10111 Length=995285 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| ||||| ||||||||| | || |||| ||||| || ||||| | Sbjct 892408 CTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCCTCCAGCTGTTTACCAGCAAAGA 892467 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCT 33648 ||| ||||||||||||| | || | |||| Sbjct 892468 TCAGACGCTGCTGATCTGGGGGAATACCT 892496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328663218105600