Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10130 320 2e-82 seq9909 89.7 5e-13 >seq10130 Length=961328 Score = 320 bits (354), Expect = 2e-82 Identities = 990/1506 (66%), Gaps = 38/1506 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || |||||||| | || || || | | || | ||||| ||| | | | Sbjct 296309 TTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 296250 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| ||||| |||||| |||| | Sbjct 296249 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAGC 296190 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || |||| | ||| || ||||||| || || ||||||||| Sbjct 296189 AGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 296131 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 || ||| | ||| ||| | ||||||||||||||||||||| || || ||| |||| Sbjct 296130 CAGGTCG--GTGGGGGTCTTCTCCCACATGTCGTACTGGAGCACCCCCCGGCTGACGGGC 296073 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAGCTTGCCTCGAG 147188 ||| || |||| |||| || || | || |||| || ||||| ||||| || Sbjct 296072 GAGCCCTCGTACGTCTCGTAGGGGCCCA-GCTCCGCCGCCAGCTCGCAGCTGGCCTCCAG 296014 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||| | | ||| ||||| ||| ||| || ||| || | ||| || ||||||| Sbjct 296013 CGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTC 295954 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | | || |||| || | ||||| ||||||| |||||||| |||| |||||| || Sbjct 295953 GAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGG 295894 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATAA 147367 || || | |||| ||||| || |||| | || |||| ||| || || | Sbjct 295893 CCGGTGGCGCTTGTTGGAGCGCTCGGC-CTCGGGGACCGGGTAGTAGTTTATCTCGATGA 295835 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAG 147427 |||||| ||||| ||| | || || || | | || |||| ||| || | | Sbjct 295834 CCTTGTTCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAAGG 295775 Query 147428 TCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCC 147486 ||| || || |||||| || ||| | |||||| || ||||| |||||||||||| Sbjct 295774 TCCGCTCGGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCC 295719 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| || | | || ||| ||| | |||| ||| ||||||||||| || ||| Sbjct 295718 ACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTG 295659 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 |||| || ||||| ||||| || || ||||| ||||| ||| |||||||||| || | Sbjct 295658 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTG 295599 Query 147607 CCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCACCCGCTG 147665 |||||||| |||| || | ||| | || ||| | ||| || |||| || Sbjct 295598 CCGGTCTCCGTCTGCGACTCGATGAT-GGCGTACCACAGCTGCTGGGCCTTCACCACCTT 295540 Query 147666 CCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCA 147725 | || ||||| |||||| ||| | | ||| ||||| || || |||| Sbjct 295539 CTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTCCCCCCAGCA 295480 Query 147726 ATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAA 147784 ||| | ||||||||||||| | || ||||||||||| ||||| | || | | Sbjct 295479 CTCGTCCAGGCCGGGACACTCGCTG-GGACACATCAGGGACCAGTCCTGGTTGCTCTCCA 295421 Query 147785 CGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCA 147842 | || | ||| ||||| || || | |||||| |||| | || || | || | ||| Sbjct 295420 CCCGCCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGC- 295362 Query 147843 ATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGG 147902 ||||| |||| |||| |||| | || | | | | |||| |||||| || Sbjct 295361 -TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGG 295303 Query 147903 TTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCAC 147959 || | ||| | ||| | || || | | || ||||||||||| || | ||| | Sbjct 295302 CTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAGCGGGC 295243 Query 147960 CATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATT 148019 ||||||| | || |||| ||| || |||||||| | | ||||||||||| Sbjct 295242 GGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGC 295183 Query 148020 GATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTT 148079 ||| | |||||| | || | | ||| ||||| ||||||||| | |||| Sbjct 295182 GATGTAGCTGCCCGTCGAGCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGCCGACTT 295123 Query 148080 TGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136 || ||| ||||| | || | |||| ||||||||| ||||||||||||| || Sbjct 295122 GGAGATGAGGGCGCACT-GCTTGAGCGTGTC--GTAGATGCCCTCGATGCTGTCGTCCTT 295066 Query 148137 GACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---CGTTCCCGCCGAGAAAAG 148193 | | | |||| || || ||| ||||| ||| || || || ||| || Sbjct 295065 CATGGCCAGCAGGAAGCAGCTGGACAGCTGCGG---CCGGTTGGTGCCGGCGTTGAAGAG 295009 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || |||||||| ||| | || | || || | |||||||| || ||| | Sbjct 295008 CGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCGATGGCGGC 294949 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| |||||| || |||| || |||||||||||||||||||| || || || Sbjct 294948 GTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTGCTGCGGCCGCTC 294889 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 ||| || | ||||||||| || || || || ||||| ||| | || ||| | Sbjct 294888 GGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAA 294829 Query 148374 CTTGTA 148379 ||||| Sbjct 294828 GTTGTA 294823 >seq9909 Length=2276304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| | |||||| | |||||| |||||| | || ||| |||| ||||||||| | Sbjct 1378311 TGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 1378252 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || | |||| ||||| ||||| ||| ||||||||||||| ||| ||||| Sbjct 1378251 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 1378200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476550551224800