Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq9863 100 9e-18 seq9873 98.7 3e-17 seq8340 98.7 3e-17 seq18 98.7 3e-17 seq1317 86.0 2e-13 >seq9863 Length=3161736 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 865183 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 865124 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 865123 ATCCCGGGTTTCGGC 865109 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 766651 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 766592 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 766591 CCGGGTTTCGGC 766580 >seq9873 Length=2792437 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2683181 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2683240 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2683241 CCGGGTTTCGGC 2683252 >seq8340 Length=1545 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1461 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1520 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1521 CCGGGTTTCGGC 1532 >seq18 Length=858257 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 631325 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 631384 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 631385 CCGGGTTTCGGC 631396 >seq1317 Length=43427 Score = 86.0 bits (94), Expect = 2e-13 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 11437 TTATGCC-GAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTA 11495 Query 2824 CAACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 11496 TGATCCCGGGTTTCGGC 11512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847835246100