Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq297 150 2e-31 >seq297 Length=3848896 Score = 150 bits (166), Expect = 2e-31 Identities = 141/177 (80%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || || | ||| || | |||||||||||| || | |||||||| ||||| || || Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 ||||||||||||||||| | || | |||||||||||| || || |||||||||||| Sbjct 2866539 ACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 2866480 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGGCAGGTCCGC 147161 ||||| |||||||| ||| |||||| || ||||| |||||| ||||| ||||| || Sbjct 2866479 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAGCGGG-AGGTCTGC 2866424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||||||||||||||||||||||||||| || |||||||| || || ||| | Sbjct 2862379 GCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCCCCCTCCTCTCTCTCT 2862320 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | ||||| || | ||| || || || ||||||||| ||| |||||||| ||| Sbjct 2862319 GTGAAGC---CCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCCCAGATCTTCACG 2862263 Query 147400 CCCTTGGCGGAGAGCTCCTT 147419 || || | || |||||||| Sbjct 2862262 CCTTTCTCTGACAGCTCCTT 2862243 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 ||||| || || |||||||||| ||||||||| ||||||||||||||||| |||||||| Sbjct 2866748 TTCAGAGGGTCAACGTGGTTGACGTAGACGTGGGCGTCCCCCAGGGTGTGGACAAAGTCA 2866689 Query 146977 CCCGGCT 146983 || |||| Sbjct 2866688 CCGGGCT 2866682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583413751152000