Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq483 116 3e-21 seq9854 86.0 6e-12 >seq483 Length=217099 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 215597 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 215656 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||||| |||||| |||| | | Sbjct 215657 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATT 215716 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||| | ||||| || || || || | || || || Sbjct 215717 CTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 215776 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 215777 AAAGATCTGCAT 215788 >seq9854 Length=3514852 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 44303 CGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGAC-AGGGCGTGGC-GAGAGCTACCC 44360 |||||| || ||||||||||| ||||| |||||||| ||||| ||| ||||| |||| Sbjct 1221775 CGTAGGTTGCATGTGGTCCATCTGCGGCATCCACGACCAGGGCTGGGCTGAGAG--ACCC 1221718 Query 44361 ATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTT 44410 ||| ||| || | ||||||||||||||||| || ||| | | ||||| Sbjct 1221717 GTCTTCGGAAAGATCCGCTACATGAACTACAAAGGCTGCCTTCGGAAGTT 1221668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450736236514400