Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq10130 197 1e-45 seq9955 98.7 1e-15 seq483 91.5 1e-13 >seq10130 Length=961328 Score = 197 bits (218), Expect = 1e-45 Identities = 913/1429 (64%), Gaps = 30/1429 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCG-CGGAACGAATTCAACACATGCTGTTGCGCG 7582 |||| || |||| |||||||| ||| | | | || || || |||||||| |||||| Sbjct 294858 CTACCTGCTGAAGATCAACGG-GAAGGTGGCCGAGCGGCCGCAGCACATGCTCATGCGCG 294916 Query 7583 TGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGT 7642 || ||||||| || |||||| ||||| ||||||||| | || |||||| | || ||| Sbjct 294917 TGTCGGTGGGGATCCACGGCCGGGACATCGACGCCGCCATCGAGACGTACAACCTGCTGT 294976 Query 7643 CTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTC 7702 | ||| ||| |||||||| ||||| || | || ||| ||||| ||| ||| | Sbjct 294977 CGGAGAAGTGGTTCACGCACGCCTCGCCGACGCTCTTCAACGCCGGCACCAACCGGCCGC 295036 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACA 7762 | ||||| || || |||| ||||| || ||||||||||| ||||| ||| ||| Sbjct 295037 AGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACA 295096 Query 7763 CGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACG 7822 |||| | |||||| || ||||| | | |||||| || || || || | | Sbjct 295097 CGCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGCGTGGCGGTGAGCT 295156 Query 7823 ACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 | | ||| | | || ||| ||||| ||||||||| || ||| ||| | | || Sbjct 295157 GCATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGC 295216 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCA 7939 | ||| |||| || | ||| ||| | | || | || |||||||| || ||| | Sbjct 295217 CGATGCTGCGGGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGCAACAAGAGGC 295276 Query 7940 AAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATC 7999 |||||| ||||| || |||||||||||||| ||| | | || | || | | Sbjct 295277 CCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGC 295336 Query 8000 TGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGG 8058 || |||| ||| || || |||| || | || || |||| ||| ||||| Sbjct 295337 TGAAGAAGAACACGGGCAAGGAGGAGCAGC-GGGCCAGGGACCTCTTCTACGGCCTGTGG 295395 Query 8059 GTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118 | ||||| ||||| |||||||| || | | || | ||||| || ||||| ||| Sbjct 295396 ATCCCCGACCTGTTCATGAGGCGGGTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCC 295455 Query 8119 GATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACA 8177 | || || || | | | | || | || || | |||| | | Sbjct 295456 -AGCGAGTGTCCCGGCCTGGACGAGTGCTGGGGGGAGGAGTTCGAGACGCTCTACACAAA 295514 Query 8178 ATACGAACACGACGGCGCGTACGTGCGGCA---AGTGAAAGCGCGCGACCTGCACCGCGC 8234 |||| | || || ||| ||| | | ||||| || | | ||| ||| Sbjct 295515 GTACG-AGGCGGAGGGGCG--GGTGAAGAAGGTGGTGAAGGCCCAGCAGCTGTGGTACGC 295571 Query 8235 CATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAA 8294 ||| ||||| | || | || ||||| | ||| |||||||| ||||| ||||| ||||| Sbjct 295572 CATCATCGAGTCGCAGACGGAGACCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAA 295631 Query 8295 CGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAAT 8354 | ||| ||||| || ||| |||||||||| |||||||| || ||| | || | Sbjct 295632 CCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGT 295691 Query 8355 TGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAA 8414 || ||| || | ||||| |||||||| ||||| || || || | | || Sbjct 295692 GGTGGAGTTCACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAA 295751 Query 8415 CGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGT- 8471 | || ||| |||| | | | || | |||| || || || | |||||| Sbjct 295752 CATGTACGT-----CACGCCCGAGCGGACCTTCGAC-TTCAAGAA--GCTGGCCGCCGTC 295803 Query 8472 -GCAA-GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAA 8529 ||| |||| || || | | |||| || | || | || || | Sbjct 295804 ACCAAGGTGATCGTGAAGAACCTGAACAAGGTCATCGAGATAAACTACTACCCGGTCCCC 295863 Query 8530 GAAG-CGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGC 8588 || | || ||| || |||| ||||||| | ||| | ||| | ||||| || |||||||| Sbjct 295864 GAGGCCGAGCG-CTCCAACAAGCGCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGC 295922 Query 8589 CGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACAT 8648 |||||| || | || ||||| ||| | ||| ||| || |||| |||||||| | Sbjct 295923 CGACGCCTTCATCCTGATGCGCTACCCGTTCGAGAGCGCCGAGGCGCAGCTGCTCAACGT 295982 Query 8649 AAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGA 8708 | || || || | || ||| ||| | || |||||||| | || || || Sbjct 295983 CCAGATCTTCGAGACCATCTACCACGCCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGA 296042 Query 8709 ATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 ||||| | ||||| |||||| |||| || | |||||| || | | || ||||| Sbjct 296043 GCTGGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCCGGGGGGTGCTCCAGTACGA 296102 Query 8769 CATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828 ||||||| | || |||||| ||||| | |||| |||| || || || Sbjct 296103 CATGTGGGAGAAGACCCCCACCGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGC 296162 Query 8829 TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCA 8888 | ||| || | || ||| || |||| ||||||||||||| | || || || Sbjct 296163 CCGGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCA 296222 Query 8889 AATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || |||| |||||||| ||| | ||| | | ||||| |||| | ||| Sbjct 296223 GATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTAC 296271 >seq9955 Length=1786201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 3843 CCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3902 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 3903 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 3962 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| || | |||||| | ||||| Sbjct 3963 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 4022 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || || || | || || ||||| || ||||| Sbjct 4023 TACAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||| | || |||||||| || || ||| ||||||| Sbjct 4071 CCACCCCTGAGACGGAGGACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGAC 4130 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 4131 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4190 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||| || || | |||||| | ||||| Sbjct 4191 ATGCCCTCCTTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 4250 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || |||||||| Sbjct 4251 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 4297 >seq483 Length=217099 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 215562 CCACCCCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 215621 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 215622 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 215681 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||| || || | |||||| | ||||| Sbjct 215682 ATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACC 215741 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || || || ||||| || Sbjct 215742 TCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 215791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505334088053600