Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq10075 93.3 6e-14 >seq10075 Length=1152483 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 213994 CCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGT 214053 |||| | ||| | ||||| | ||||| || || || |||| || ||||| ||||| Sbjct 703609 CCAGCTGATTAATGGGGAGATGTACCCCCCGACGGTGTCCGAGGTCCCGGTGCACATGGT 703668 Query 214054 TTACGAACCC--AGCGTTCCC-GAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGG 214110 ||| ||| || ||||| | || ||| | || | ||| | ||| |||| || Sbjct 703669 GTAC---CCCGAAGGTTTCCCTGCTGAGCAGCGTCTGGCCATCGGTCAGGAGGTGTTCGG 703725 Query 214111 ACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTG 214170 |||||||| || ||| ||||| |||| ||||||||||| ||||||||||| || || Sbjct 703726 GCTCGTGCCGGGCCTCACCGTGTATGCCACCATCTGGCTGAGGGAGCACAACAGAGTGTG 703785 Query 214171 CGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||| | ||||| ||||| || ||| | || || ||||| ||||||| Sbjct 703786 TGACATCCTGAAGGGGGAGCATCCAACCTGGGATGATGAGCAGCTTTTCCAGA 703838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723248754883200