Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq51 102 1e-16 seq9909 95.1 2e-14 >seq51 Length=752366 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||| || || | || || || ||||| || || | ||| | Sbjct 77555 CCTCATCCCTGCTAATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCT 77614 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | ||||||||||| || ||||| |||||||| || || || |||||||| | Sbjct 77615 TCAGCCAGTAGATGGCAGCAAATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAAG 77674 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||||| ||| || Sbjct 77675 CCACAAGTCGCTCCCC 77690 >seq9909 Length=2276304 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 69297 TACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGT 69356 |||||||| | ||| || | ||| || ||||| || ||||| || | ||||| || Sbjct 1378328 TACCTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGT 1378269 Query 69357 CCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGT 69416 |||||||||||||| || |||| |||| |||||||||||||| || || |||| || Sbjct 1378268 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 1378209 Query 69417 ACCAGTTTCAATCTGAGATTCGATAAT 69443 || || || |||| || ||||| || Sbjct 1378208 GCCCGTCTCTGTCTGCGACTCGATGAT 1378182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686821390855200