Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1944 111 1e-19 >seq1944 Length=54164 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||||||| | || ||| | ||||||||||| ||||| || ||||||| Sbjct 40117 CCAGACCACCTCCAGCTCAGAGTTCAGTCGCTCCAGCTTCATGAAGTCTTCTTTGTTGAT 40176 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 || | ||||| | ||||||||| |||||| ||||||||||||| ||||| | || Sbjct 40177 GACCGGACCTCCAGACTTCAGCCTCCACCCGTTCAGCTTCCAGTTCTTCACCCAGCTGGT 40236 Query 77431 CACACC 77436 |||||| Sbjct 40237 CACACC 40242 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| |||||||||||| ||||||||||||| | |||||||||| ||| ||||||| || Sbjct 40317 CACCGTTGATGGTGAACTTGCTGTCTGTGTACAGAACCAGCTTCTGGATGTTGTTCTGCT 40376 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 || |||| ||| ||| || | || |||||| Sbjct 40377 TGGCCTGTTCCAGAGCTCTGCACGCCGCCTGG 40408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397406688130900