Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq10130 87.8 6e-12 >seq10130 Length=961328 Score = 87.8 bits (96), Expect = 6e-12 Identities = 342/530 (65%), Gaps = 6/530 (1%) Strand=Plus/Plus Query 254738 CTATCGTTGAAACGGTACACGCATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCG- 254796 || ||| ||| ||| |||||| || | ||||| ||||||| ||||| || || Sbjct 294973 CTGTCGGAGAAGTGGTTCACGCACGCCTCGCCGACGCTCTTCAACGCCGGCACCAACCGG 295032 Query 254797 CCAAACCTTGGCCAGCTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTT 254856 || | || | ||||||||| ||| ||| |||| | || ||||| ||| | ||||||| Sbjct 295033 CCGCAGCT-GTCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTA 295091 Query 254857 CGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACAT 254916 ||| ||||| || ||||| || | | ||| ||||||| | || | | Sbjct 295092 CGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGCGTGGCGGT 295151 Query 254917 CTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG-ACGAACGGACGGAGCGGCGGCA 254975 | | | ||| | | |||| || ||| | || ||||| | |||| Sbjct 295152 GAGCTGCATCCGCTCGACGGGCAGCTACAT-CGCCGGCACCAACGGCAACTCCAACGGCC 295210 Query 254976 TTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCA 255035 | | || ||| | || || | ||||||| || |||||||| || || || ||| || Sbjct 295211 TGGTGCCGATGCTGCGGGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGCAACA 295270 Query 255036 AACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG-GTTT 255094 | | || || || ||| |||| |||||||||||||||||| |||| || || || Sbjct 295271 AGAGGCCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGAC-GTGTTCGACTTC 295329 Query 255095 TTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCT 255154 | |||| | || || |||| ||||||| | ||| | ||| ||| | || Sbjct 295330 CTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAGCGGGCCAGGGACCTCTTCTACGGC 295389 Query 255155 GTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATG 255214 | ||| | ||| ||||| ||| | || ||||| | || || |||| ||| ||| Sbjct 295390 CTGTGGATCCCCGACCTGTTCATGAGGCGGGTGGAGAGCAACCAGGACTGGTCCCTGATG 295449 Query 255215 TGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 ||||||| | | ||||| || | ||| | ||||| || ||||| || Sbjct 295450 TGTCCCAGCGAGTGTCCCGGCCTGGACGAGTGCTGGGGGGAGGAGTTCGA 295499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588128831350100