Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10130 201 1e-46 seq9909 109 7e-19 seq51 91.5 2e-13 >seq10130 Length=961328 Score = 201 bits (222), Expect = 1e-46 Identities = 956/1497 (64%), Gaps = 54/1497 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | ||||| |||| |||||| |||||| Sbjct 296364 CTTCATGTCCTCGCTCCACAGCCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 296305 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | |||| | | ||||||||| | ||||| | || | Sbjct 296304 GATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 296245 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 296244 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAGCAGCAG 296185 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 296184 GCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 296125 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | | || || || |||||||||| |||| |||||||| || |||| || |||| Sbjct 296124 GGTGGGGGTCTTCT-CCCACATGTCGTACTGGAGCACCCCCCGGCTGACGGGCGAGCCCT 296066 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 110972 | | || || |||| || | | | |||| || ||||| |||||||| | |||| Sbjct 296065 CGTACGTCTCGTAGGGGCCCAGCTCCGCCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGT 296006 Query 110973 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 111032 | || ||||| || ||||| | | || | | || || || | || || | || Sbjct 296005 GGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTCTCGAACGGGT 295946 Query 111033 AGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTC 111092 |||| || || || | || || ||||| || || || | || || || | ||| | Sbjct 295945 AGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGC 295886 Query 111093 GCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 || | || || ||| | | ||| || || || | ||| | || ||||| || Sbjct 295885 GCTTGTTGGAG---CGCTCGGCCTCGGGGACCGGGTAGTAGTTTATCTCGATGACCTTGT 295829 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | || || || | | ||| |||| | || || | | || || || || Sbjct 295828 TCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAAGGTCCG-- 295771 Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 ||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 295770 -CTCGGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 295712 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 |||| ||| |||| | | || || || | |||| | ||| || || |||| | Sbjct 295711 CCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 295652 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| ||||| ||||| |||||| || ||||||||||||||||||||||| || |||| Sbjct 295651 TCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCT 295592 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGC--GGCTGGTACAATGGCGTTGGC 111447 ||||||| || | || || || | ||| || | || ||| || | || | Sbjct 295591 CCGTCTGCGACTCGATGATGGCGTACCA--CAGCTGCTGGGCCTTCACCACCTTCTTCAC 295534 Query 111448 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGG 111506 ||| |||||||||||||||||||||||||| | || |||||||| ||| | || ||| Sbjct 295533 CCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTC-CCCCCAGCACTCGT 295475 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCG 111564 || || || || | ||||| | || ||||| | || || ||| ||||| Sbjct 295474 CCAGGCCGGGACACTCGCTGGGACACATCAGGGACCA--GTCCTGGTTGCTCTCCACCCG 295417 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 | ||||||| ||||| || ||||||||| | ||||| || || ||| ||| || Sbjct 295416 CCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTC 295357 Query 111625 GTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | || ||| || | | ||| ||||| || | | || |||||| ||||| | Sbjct 295356 CTTGCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCA 295298 Query 111684 GATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCT 111736 | || | |||| | || ||| | | ||||| || | || ||||| || Sbjct 295297 GGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCC----TGGTCCACGTAGCGGGCG 295242 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| | || || ||||| || | | || | || | || || || || Sbjct 295241 GTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCC---- 295186 Query 111797 ATACGAGATTTA-TTGGCTCTC-ACATCATGGATGT-----GCATCCCAATACCCCCAGC 111849 | ||| || || | || | ||| | | || || || || || || Sbjct 295185 ---GGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGC 295129 Query 111850 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 | |||| ||||| | || |||| | | || || | ||||| || | ||| ||| || Sbjct 295128 CGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTC 295069 Query 111910 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAG 111967 ||| |||| | |||||||| ||||||| |||||| | |||||| || || |||||| Sbjct 295068 CTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTG--CCGGCGTTGAAG 295011 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || | ||||| ||||| || | | |||| | || ||| ||||| | | | Sbjct 295010 AGCGTCGGCGAGGCGTGCGTGAAC-CACTTCTCCGACAGCAGGTTGTACGTCTCGATGGC 294952 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || ||||| |||||||| || | | || ||||||| ||||| ||| || Sbjct 294951 GGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTGCTGCGG 294895 >seq9909 Length=2276304 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| ||||||||||| |||||||| || | ||| ||| || || || Sbjct 1378325 CTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCC 1378266 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 1378265 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCC 1378206 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| ||||| || | || || || | ||| Sbjct 1378205 CGTCTCTGTCTGCGACTCGATGATGGCGTGCCA 1378173 >seq51 Length=752366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| |||||||| ||| || || || |||||||| || | ||||| Sbjct 77555 CCTCATCCCTGCTAATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCT 77614 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| ||| || || || ||| ||||| || ||||||||||| ||||||||| ||||| Sbjct 77615 TCAGCCAGTAGATGGCAGCA-AATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAA 77673 Query 122797 GCAAAAAGGCGTTC 122810 || | ||| || || Sbjct 77674 GCCACAAGTCGCTC 77687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627952082928000