Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10130 203 4e-47 seq9909 102 1e-16 seq51 102 1e-16 >seq10130 Length=961328 Score = 203 bits (224), Expect = 4e-47 Identities = 899/1403 (64%), Gaps = 68/1403 (5%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 296270 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 296211 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || ||| Sbjct 296210 GCGGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCC 296151 Query 118302 TTGAG-AGC-----GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || ||| |||||| || | || | | |||||| |||| || || Sbjct 296150 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGGGTCTTCTCCC------ACATGTCGTAC 296097 Query 118356 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 ||||| | || || |||| ||||| ||||| | ||||| || |||||| || Sbjct 296096 TGGAGCACCCCCCGGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCCG 296039 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 |||||| ||| |||| ||||| || || ||||| || || || || || || | | | Sbjct 296038 CCGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGT 295979 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 | | || |||||| || || |||| | || || || || | || || | Sbjct 295978 TGAGCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCA 295919 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC- 118592 |||| ||||| |||| ||| || || || || | | | || || || ||| ||| Sbjct 295918 GACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAG---CGCTCGGCCTCGG 295862 Query 118593 --ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 || || || | || | ||||| ||| | || || || || || ||||| |||| Sbjct 295861 GGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGTGA 295802 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 118710 | ||||| | | | || || | || ||| |||| ||| | |||| Sbjct 295801 CGGCGGCCAGCTTCTTGAAGTCGAAGGTCCG---CTCGGGCGTGACGTACATGTTGAGGG 295745 Query 118711 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 118770 |||| || ||||| || || || | ||| ||||| ||| |||| | | || | Sbjct 295744 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGG 295685 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 |||| | ||| | ||| |||||||||| ||||| || || ||| ||| || | Sbjct 295684 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGG 295625 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | |||||||| |||||||| ||||| || |||||||| || |||| || || || | || Sbjct 295624 CGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACC 295565 Query 118891 AGACATCGGCAGCTGG-----CACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 | | || ||||| ||| || | |||||||| ||||||||||||| Sbjct 295564 ACA-----GCTGCTGGGCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGT 295510 Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-C 119004 |||||| | || ||||| || ||| | ||| || || || || ||||| | Sbjct 295509 GTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCG-CTGGGAC 295451 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 | | || ||||| | || | ||| |||||| ||||||| ||||| |||||||| Sbjct 295450 ACATCAGGGACCAGT--CCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCA 295393 Query 119063 GAGCGCCG-AGAAGAGATCCC--GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 119119 || |||| ||||||| |||| | | || ||| || | | ||| || || || Sbjct 295392 CAG-GCCGTAGAAGAGGTCCCTGGCCCGCT-GCTCCTCCTTGCCCGTG-TTCTTCTTCAG 295336 Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--- 119176 ||||| ||||| | | || ||||||||| |||||||||| |||| | || Sbjct 295335 CTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGG 295276 Query 119177 -CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTG 119235 || | | || |||||| || || | || ||| ||| | || || ||||| | Sbjct 295275 CCTCTTGTTG-CCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCG 295217 Query 119236 GAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACAT 119295 | | | || | ||| | ||| || || || | || || || | | Sbjct 295216 GCACCAGGCCGTTGGAGTTGCCGTTGGTGCCG-------GCGATGTAGCTGCCCGTCGAG 295164 Query 119296 CG--TGGATGTG-----CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 || || | | || || || || || ||| |||| ||||| | ||||||| | Sbjct 295163 CGGATGCAGCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGC 295104 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 |||| || ||||||| || ||||| ||| |||| | || | ||||||||||| Sbjct 295103 TTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTG 295044 Query 119409 GACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA 119468 |||| || |||| | || || ||||||||||| || || | ||||| ||||| | Sbjct 295043 GACAGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAAC-CA 294985 Query 119469 CCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACC 119527 | | | |||| | || ||| ||||| | | ||||| ||||| ||||| || || Sbjct 294984 CTTCTCCGACAGCAGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCC 294925 Query 119528 GATCGAGACCCGCATAAACATGT 119550 | ||| || ||||| | ||||| Sbjct 294924 CACCGACACGCGCATGAGCATGT 294902 >seq9909 Length=2276304 Score = 102 bits (112), Expect = 1e-16 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| ||| ||||||||||| ||||| ||||||| || || | ||| |||||| Sbjct 1378325 CTCATCTTTACTTGTGTACTCTATGATTTCTGTGCACAGATTGCTGGA--CTTGATGGTG 1378268 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| || | || || | ||| |||| || || |||||||| |||||||| ||||| Sbjct 1378267 CCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTG 1378208 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 |||||||| || || |||| || || || | ||||| Sbjct 1378207 CCCGTCTCTGTCTGCGACTCGATGATGGCGTGCCAGA 1378171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||| ||||| | ||||||||||||||| ||| ||||| ||||| Sbjct 1381397 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 1381338 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| || |||||||| Sbjct 1381337 GCTGTGGGCATTGGGGCCAAAAGCAGGCTGTT 1381306 >seq51 Length=752366 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 130049 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 ||||||||||| ||| || || || |||||||| || | |||||||| |||| | || Sbjct 77569 ATGAGTTCATTGGAGTAGGTAAGGCCCGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATG 77628 Query 130109 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| ||||||||||||||||||||||||||||||| || || || | || ||||| Sbjct 77629 GCAGCAAATGAGCCAGAGAAGAAGATCCCCTCCACAGCTGCAAAAGCCACAAGTCGCTC 77687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618356504120800