Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10130 178 2e-39 seq51 84.2 3e-11 >seq10130 Length=961328 Score = 178 bits (196), Expect = 2e-39 Identities = 954/1503 (63%), Gaps = 66/1503 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||||||| | | || || || || ||||| || | | | Sbjct 294895 CCGCAGCACATGCTCATGCGCGTGTCGGTGGGGATCCACGGCCGGGACATCGACGCCGCC 294954 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || || ||||| Sbjct 294955 ATCGAGACGTACAACCTGCTGTCGGAGAAGTG-GTTCACGCACGCCTCGCCGACGCTCTT 295013 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || |||||| | || || ||||||| |||||||| | |||| ||||| Sbjct 295014 CAACGCCGG--CACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGAC 295071 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | |||| || | ||||| |||| ||| Sbjct 295072 GACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCC 295131 Query 104459 GGGGGTATTGGGATGC-----ACATCCATGATGT-GAGAGCCAA-TAAATCTCGTATTCG 104511 || || || || || | | ||| | || | || || ||| | Sbjct 295132 GGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCTCGACGGGCAGCTACATCGCC------ 295185 Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || || || | || | || | | || ||||| || || | ||| ||| || Sbjct 295186 -GGCACCAACGGCAACTCCAACGGCCTGGTGCCGATGCTGCGGGTCTACAACAACACCGC 295244 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTG 104624 ||||| || | || ||||| | | ||| || | |||| | || || | Sbjct 295245 CCGCTACGTGGACCA----GGGCGGCAACAAGAGGCCCGGCGCCTTCGCCATGTACCTGG 295300 Query 104625 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGG 104684 |||| |||||| || | | || ||||| ||| || ||| || | |||| Sbjct 295301 AGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGG 295360 Query 104685 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 || |||| | | || ||||||| || || ||||| || || || ||||||| | | | Sbjct 295361 AGCAGCGGGCCAGGGACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAGGCGGG 295420 Query 104745 TTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801 | |||||| | | ||||| || | ||||| | || || || || || Sbjct 295421 T---GGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAGCGAGTGTCCCGGCCTGGACG 295477 Query 104802 A-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 | ||| | ||| |||||||| || | || |||||||||||||||| || || |||| | Sbjct 295478 AGTGCTGGGGG-GAGGAGTTCGAGACGCTCTACACAAAGTACGAGGCGGAGGGGCGGGTG 295536 Query 104861 ACTGCGACGGTG-----CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 | | |||| ||||| || ||||| | || || || |||| || || | Sbjct 295537 AAGAAGGTGGTGAAGGCCCAGCAGC-----TGTGGTACGCCATCATCGAGTCGCAGACGG 295591 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 |||| || || || |||||||| ||||| |||||||| |||| ||||| || || ||| Sbjct 295592 AGACCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGA 295651 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 | |||| |||||| | ||| ||||| || || | |||| || || ||| | Sbjct 295652 ACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGAGTTCACCAGCAAGG 295711 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 | ||| ||| || || ||||| || || ||||| ||| || ||| || || ||| Sbjct 295712 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCCGAG- 295770 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAA 105155 ||| || || | | || || || || || || || || ||||| | Sbjct 295771 --CGGACCTTCGACTTCAAGAAGCTGGCCGCCGTCACCAAGGTGATCGTGAAGAACCTGA 295828 Query 105156 ACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGA 105212 ||| || || || | ||| | ||||| || ||| | | || || || | | Sbjct 295829 ACAAGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCG---CTCCAACAAGC 295885 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCC 105272 | ||||| || || || |||| || |||||||| || || | ||||| || ||| Sbjct 295886 GCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGCT 295945 Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332 || | || || || ||| ||| || |||| | | || || |||||||| || | Sbjct 295946 ACCCGTTCGAGAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCGAGACCATCTACC 296005 Query 105333 ACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392 ||||||| || ||||| || | ||| |||| | || || || || || || | | Sbjct 296006 ACGCCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGAGCTGGGCCCCTACGAGACGTACG 296065 Query 105393 AGGGTTCTCCAGCTTCA--CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 105450 |||| || || | ||| | |||||||| || | || ||||||| || || || | Sbjct 296066 AGGGCTCGCC--CGTCAGCCGGGGGGTGCTCCAGTACGACATGTGGG-AGAAGACCCCCA 296122 Query 105451 GC-TTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 105508 | | | |||| ||||||| || ||||| ||| | | || | | ||| Sbjct 296123 CCGACCTGTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCCGGCACGGCGTGAGGAAC 296181 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568 || || || |||| || ||||| || ||||||||||| || ||| |||| || || || Sbjct 296182 AGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTGGGCAACAACGAG 296241 Query 105569 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 105628 | | | || ||||||| | |||||||| | | |||| | || ||||| | Sbjct 296242 TCCATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTCTCCGGCGAGTTCCAG 296301 Query 105629 ATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 105688 || |||||| || ||| | | ||||| | ||| || || ||| | |||| ||| Sbjct 296302 ATCGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGGCTGTGGAGCGAGGACATG 296361 Query 105689 AAG 105691 ||| Sbjct 296362 AAG 296364 >seq51 Length=752366 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 94862 |||||||| | || ||||| ||| ||||| |||||||||||||| || || ||| || Sbjct 77687 GAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATT-TGCTGC 77629 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || || ||||| |||||| |||| |||||||| || || || |||||| || || || Sbjct 77628 CATCTACTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTTACCTACTCCAATGAACTCAT 77569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583186580063200