Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq642 187 8e-42 seq9947 138 3e-27 seq721 127 6e-24 seq9955 113 1e-19 seq483 113 1e-19 >seq642 Length=144868 Score = 187 bits (206), Expect = 8e-42 Identities = 374/547 (68%), Gaps = 12/547 (2%) Strand=Plus/Plus Query 349766 AATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| |||| || ||||| | |||||||| ||||||||||| || | || ||| |||| Sbjct 135496 AATGTTCTCATCTTTGACCTCGGTGGTGGCACTTTTGATGTGTCTATCCTGACAATTGAG 135555 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 || || || ||||| || || || || ||||| || |||||| | ||||| || || ||| Sbjct 135556 GATGGCATCTTTGAGGTCAAGGCCACAGCTGGGGACACACATTTGGGTGGGGAGGACTTT 135615 Query 349886 GATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCT-AAAATTGATAT 349944 ||||| || | ||| || ||| || || || ||||| |||| | |||| || || Sbjct 135616 GATAACCGCATGGTTAACCACTTTATTGCTGAGTTCAAGCG-CAAGTTCAAAAAGGACAT 135674 Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004 | || |||| ||||||| || | || |||||||| || |||||||| | Sbjct 135675 CATCAACAACAAGCGAGCCGTGCGTCGTCTGCGTACGGCGTGTGAGCGAGCTAAGCGCAC 135734 Query 350005 CTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTT 350064 | | || | ||||| || ||||| || || || || ||| || | ||| || Sbjct 135735 CCTCTCCAGCAGCACCCAGGCCAGCATTGAGATCGACTCACTCTATGAGGGAACAGACTT 135794 Query 350065 CTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCA 350122 || | || ||||| | || || |||||||| | ||| | || || || | | | Sbjct 135795 CTACACCTCCATTACCAGGGCCCGCTTTGAAGAGCTCAATGCA--GACCTGTTCCGTGGA 135852 Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 || |||| || |||||||| | | | ||||| || ||| ||||| |||||| || Sbjct 135853 ACTCTGGAGCCCGTGGAAAAGGCCCTGAGGGATGCCAAGATGGACAAAAGTCAGATCCAT 135912 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 || || ||| |||| ||||| || || ||||||||||| | ||| || | || || Sbjct 135913 GATGTTGTTCTAGTGGGTGGCTCCACGCGTATTCCAAAGATCCAAAAGCTTCTGCAGGAC 135972 Query 350243 TTTTTTAATGGCAAAGAACCTT---CTAGATCAATTAATCCAGATGAAGCTGTTGCATAT 350299 || |||||||| || ||| | ||| | || || |||||||| || ||||| ||| Sbjct 135973 TTGTTTAATGGTCGTGA--CTTGAACAAGAGC-ATCAACCCAGATGAGGCAGTTGCGTAT 136029 Query 350300 GGTGCTG 350306 || |||| Sbjct 136030 GGGGCTG 136036 >seq9947 Length=1900904 Score = 138 bits (152), Expect = 3e-27 Identities = 499/776 (64%), Gaps = 10/776 (1%) Strand=Plus/Minus Query 183020 ATTATTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTG 183079 ||| || || || || | ||||||||||||||||| || ||||| || ||||||| Sbjct 881874 ATTGTTGTCCTTGGTCATGGCTCTCTCGCCTTCATACACCTGAATCAGGACGCCTGGCTG 881815 Query 183080 ATTATCACTATAAGTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGG 183139 ||||| || || ||||| | || | | || |||| || || | || || Sbjct 881814 GTTATCTGAGTACGTGGAAAAGATCTGAGTCTGCTTCGTAGGGATGGTGGTGTTCCGTTT 881755 Query 183140 AACAATTACAGTCATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATC 183199 | || ||||| ||| | | || || || | || | || || || || ||||| Sbjct 881754 GATAAGGGGGGTCATAACTCCACCAGCTGTCTCAATGCCCAGGGACAAGGGCGCCACATC 881695 Query 183200 TAGTAATAATAAATCT--GATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGA 183257 || | | ||||||| || ||| | |||| | | | | || ||||| || Sbjct 881694 CAGGAGCAGTAAATCTTGGACGTTCT--CTGAGGTGTCCCCCATGAGGATAGCAGCCTGG 881637 Query 183258 ACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCA 183317 || |||||||| || || || |||||||| ||||| || || ||| | ||| Sbjct 881636 ACTGCTGCACCGTAGGCCACCGCTTCATCAGGGTTGATACTTTTGTTTAGATCTCTACCA 881577 Query 183318 TTAAA-AAATTCTGAA--AGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACT 183374 || || |||| ||| | ||| | ||| ||||| || ||||| ||||| ||||||||| Sbjct 881576 TTGAAGAAATCCTGTAGGAGCTTCTGT---ATTTTGGGGATTCTTGTTGAGCCACCGACT 881520 Query 183375 AATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACA 183434 | || | ||||| ||| || |||| | | | ||||| || | || |||||| Sbjct 881519 AGGACAATTTCATGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACA 881460 Query 183435 GGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAA 183494 || |||| ||| || || | || | | ||| || || | ||| || || | Sbjct 881459 GGTTCCAGTGTTCCCCTGAAGAGGTCCGAATTGAGCTCCTCAAAGCGTGCCCTTGTGATT 881400 Query 183495 GATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGAT 183554 || | |||||||||| || | | | | || ||||| ||||| | || || Sbjct 881399 GAGGTGTAAAAGTCAATGCCCTCAAACAGTGAGTCAATCTCAATGCTGGCCTGAGTGCTG 881340 Query 183555 GATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGA 183614 || ||||| || || || || | ||||| ||||| | |||| | | | ||| Sbjct 881339 GAGGATAAGGTCCTCTTTGCCCTCTCACAAGCTGTGCGCAGTCTCCTCACGGCTCTCTTG 881280 Query 183615 TTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAAT 183674 || | | ||||||| || |||||||||||||| || | ||| || | | | Sbjct 881279 TTCTGGCTGATATCTTTCTTGTGTTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATT 881220 Query 183675 CTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAAT 183734 | | ||||| || || || || | ||||| || || || || ||||| || |||||| Sbjct 881219 CGGTTGTCAAAGTCCTCCCCGCCAAGGTGTGTGTCCCCCGCTGTGGCTTTCACCTCAAAT 881160 Query 183735 ATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || ||||| ||||| | | || || || ||||| || || ||||| | |||||| Sbjct 881159 ATGCCGTCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAA 881104 >seq721 Length=143997 Score = 127 bits (140), Expect = 6e-24 Identities = 358/540 (66%), Gaps = 10/540 (2%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 ||||| |||||| | ||||| ||||| ||||| || || | |||| |||| || || Sbjct 65482 CTTATCTTTGATCTTGGTGGCGGTACCTTTGACGTTTCCATCTTAACCATTGAGGATGGT 65423 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || |||||||| || | |||||||| ||||| ||||||||||| ||||| ||||| || Sbjct 65422 ATCTTTGAAGTGAAGTCCACTGCTGGAGATACTCATCTTGGTGGGGAAGACTTTGACAAC 65363 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 || | ||| || ||| || || || || || |||| || | || || | || Sbjct 65362 CGCATGGTTAACCACTTTATTGCTGAGTTCAAACG-CAAGTACAAGAAGGACATCAGTGA 65304 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || ||| | || || || | || || || || | || |||||| || | || Sbjct 65303 CAACAAGAGGGCAGTCCGCCGTCTGCGCACCGCATGCGAGAGGGCAAAGCGTACCCTGTC 65244 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | ||||| || |||||||| || || || ||| || || |||| | Sbjct 65243 TTCCAGCACCCAGGCCAGCATTGAAATCGACTCGCTCTATGAGGGAGTTGACTTCTACAC 65184 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATG 350128 || || || | ||||| || || || || ||| || || || | | ||| | Sbjct 65183 CTCCATCACCAGAGCTCGTTTCGAGGA--GCTGAATGCCGACCTCTTCCGTGGAACCCTA 65126 Query 350129 GATCCTGTGGAAAAAGTAT-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGT 350187 || || |||| | |||| | | ||||| || ||| |||| ||||| |||| | Sbjct 65125 GACCCAGTGG-AGAAGTCTCTCCGTGATGCCAAGATGGACAAAGGCCAGATCCATGACAT 65067 Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTT 350247 || || || || || || || ||||| || || | || || | || || || || Sbjct 65066 CGTCTTGGTGGGAGGCTCCACCCGTATCCCCAAGATCCAGAAGCTGCTTCAGGATTTCTT 65007 Query 350248 TAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTG 350306 ||||| || || | | | ||| | || || ||||||||||||||||| ||||| |||| Sbjct 65006 CAATGGAAAGGAGCTCAACAAGAGC-ATCAACCCAGATGAAGCTGTTGCTTATGGAGCTG 64948 >seq9955 Length=1786201 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 140538 AGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTT 140597 || || || ||||| || || | || ||||| | || || |||||||| || ||||| Sbjct 4098 AGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTG 4157 Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || | ||||| ||||| || || || || || ||||| || |||||| Sbjct 4158 CCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCT 4217 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | || || || || || || || | ||||| || || || Sbjct 4218 TTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGG 4277 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || ||||| || ||||| Sbjct 4278 GTCTTGACAAAGATTTGCAT 4297 Score = 104 bits (114), Expect = 7e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || ||||| | || || |||||| Sbjct 3858 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 3917 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| || | ||||| ||||| || || || || || ||| Sbjct 3918 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3977 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | || || || || | || || | ||| Sbjct 3978 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGTC 4037 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 4038 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 >seq483 Length=217099 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || ||||| | || || |||||| Sbjct 215577 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 215636 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| || || || || || ||| Sbjct 215637 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 215696 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| ||||| || || | || || || || || || || | ||| Sbjct 215697 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTC 215756 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 215757 TTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 215788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515056763474540