Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10130 567 8e-157 seq9909 109 6e-19 seq51 96.9 4e-15 seq348 91.5 2e-13 >seq10130 Length=961328 Score = 567 bits (628), Expect = 8e-157 Identities = 1009/1454 (69%), Gaps = 41/1454 (3%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||||||||||| ||| |||||| |||||||||| | ||||| | ||||| | ||| Sbjct 296298 GAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTC 296239 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| |||||||| |||||||| || | ||| || || Sbjct 296238 GTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAGCAGCAGGCTGTT 296179 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || ||| ||||| |||| || | |||||| | || | | Sbjct 296178 CCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGG 296119 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGG-CGACCCCTTGAACG 78739 | || |||||||||| || || | ||| ||| | ||| ||| |||| | ||| Sbjct 296118 GGTCTTCTCCCACATGTCGTACTGGAGCACCCCC-CGGCTGACGGGCGAGCCCTCGTACG 296060 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGT 78796 ||||||| | ||| |||| || || ||||| | ||| ||| || ||||||| Sbjct 296059 TCTCGTAGGGGCCCAGCTCCGCCGCCAGCTCGCAGCTGGCCTCCAGC---GCGGCGTGGT 296003 Query 78797 ACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGT-CTCGTCGAACGAAAGG 78855 | | | ||||||||| ||||||| |||||| || ||| ||||||| || Sbjct 296002 AGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTCGGCGCTC-TCGAACG---GG 295947 Query 78856 CCGAGCATCA---TGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGG 78912 | |||||| ||||| | |||||||| |||||||||||||| |||| || |||||| Sbjct 295946 TAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTGG 295887 Query 78913 CGCATGTTGCTCTTTCGGGCCGCCTCGGT---CGGGTAAAAGTTCCGATCGATGACGCGG 78969 ||| ||||| || | ||||||| |||||| |||| |||||||| | Sbjct 295886 CGCTTGTTGGAG---CGCTCGGCCTCGGGGACCGGGTAGTAGTTTATCTCGATGACCTTG 295830 Query 78970 TTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTT 79029 |||||||| | || ||| || || || || || ||| || || | | Sbjct 295829 TTCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAA--GGTCC 295772 Query 79030 CCTT-----TGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGT 79084 || ||| | | | ||| | || ||||||||||| |||||| ||||| Sbjct 295771 GCTCGGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 295712 Query 79085 CCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGT 79144 || ||| | | ||| | | || ||||| | || ||||||||||||| | || Sbjct 295711 CCTTGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 295652 Query 79145 TCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCT 79204 ||| |||||||||||| ||| ||||||||||||||| |||||| ||||| ||||||| Sbjct 295651 TCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCT 295592 Query 79205 CAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACC 79264 | ||| || || | | ||| ||| | | | ||||| || |||||||| || Sbjct 295591 CCGTCTGCGACTCGATGATGGCGTACCACAGCTGCTGGGCCTTCACCACCTTCTTCACCC 295532 Query 79265 GACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCA 79324 | |||| || ||||| | ||| | | | ||| ||||||| || ||| || Sbjct 295531 GCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTCCCCCCAGCACTCGTCCA 295472 Query 79325 GGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCA 79384 |||| || |||||| || ||||||||| |||||||| || |||| ||| | || Sbjct 295471 GGCCGGGACACTCGCTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCA 295412 Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||| ||||| |||||||||||| |||| ||||||||| | | ||| |||||| | | Sbjct 295411 TGAACAGGTCGGGGATCCACAGG-CCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTG 295353 Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 ||| |||| |||||| || ||||| | | |||| ||||||||||||||| || Sbjct 295352 CCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTAC 295293 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 |||||||| | || | |||| ||||||||||| ||||| ||||| ||||||||| Sbjct 295292 ATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTG 295233 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 | || || ||||| ||||| | ||||| || | |||||| || ||| ||| | Sbjct 295232 TAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTG 295173 Query 79624 CCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 || ||| || ||| | || | | |||||||| |||| | ||||||||||| | Sbjct 295172 CCCGTCGAGCGGATG-CAGCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAG 295114 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 ||||||| ||||||||| ||||||||||||||||| |||||||||||| || | ||| Sbjct 295113 GGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAG 295054 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 ||||||||| |||| ||| || ||| || |||||||||||||| ||||||| ||||| Sbjct 295053 GAAGCAGCTGGACAGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTG 294994 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCG-GGAGGTCGTCGC 79861 |||||| |||| | || ||| | ||||||||| || || ||| || ||| || Sbjct 294993 CGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCGATGGCG-GCGTCGATGTCCCGGC 294935 Query 79862 CGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGT 79921 ||||||| || |||| |||||||||| | || ||| ||| |||| | || ||| || Sbjct 294934 CGTGGATCCCCACCGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGT 294875 Query 79922 AGCCCTTCTGCAGG 79935 | |||| ||||| Sbjct 294874 TGATCTTCAGCAGG 294861 Score = 461 bits (510), Expect = 8e-125 Identities = 967/1422 (68%), Gaps = 31/1422 (2%) Strand=Plus/Plus Query 19069 CCTGCAGAAGGGCTACCTCAACGAGGGTGAGACGCCTCAGTACCTTTTCATGCGAGTCGC 19128 ||||| |||| | || || | || ||| ||| ||| || | ||||||| || | Sbjct 294861 CCTGCTGAAGATCAACGGGAAGGTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTC 294920 Query 19129 GGTCGGCATCCATGGCGACGACCTCC-CGCGAGTCCGCGAGACATACGACCTGATGAGCC 19187 ||| || ||||| ||| ||| || ||| | | |||||| ||| ||||| || Sbjct 294921 GGTGGGGATCCACGGCCGGGACATCGACGCC-GCCATCGAGACGTACAACCTGCTGTCGG 294979 Query 19188 AGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGA 19247 |||||| ||||||||||| ||||||| || ||||||||||| || ||| |||||| Sbjct 294980 AGAAGTGGTTCACGCACGCCTCGCCGACGCTCTTCAACGCCGGCACCAACCGGCCGCAGC 295039 Query 19248 TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGC 19307 |||| ||||| ||||| |||| |||||||| |||||||| |||||||||||||| |||| Sbjct 295040 TGTCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGC 295099 Query 19308 TCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG-GATCCACTGCTCGAAT 19366 ||||| ||||||| | ||||||||||| | |||| || ||||| | | || | Sbjct 295100 TCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGCGTGGCGGTGAGC-TGC 295158 Query 19367 ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCA 19426 ||||| |||| || | ||| || || ||||| || |||| | || || Sbjct 295159 ATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCG 295218 Query 19427 ATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAG 19486 ||||| || |||| ||||||||| ||| | ||||| ||||||| ||| ||| | Sbjct 295219 ATGCTGCGGGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGCAACAAGAGGCCC 295278 Query 19487 GGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTG 19546 ||| | |||||||| ||||| ||||| |||||| ||||| | || ||||| || ||| Sbjct 295279 GGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTG 295338 Query 19547 CGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGAT 19605 |||| ||| | |||||| ||| | ||||||||| |||||| ||||||| Sbjct 295339 AAGAAGAACACGGGCAAGGAGGAGCAGCGGGCCAGGGACCTCTTCTACGGCC-TGTGGAT 295397 Query 19606 TCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCA 19665 || ||||| |||||| | ||| |||| || | || ||| ||||||||| || Sbjct 295398 CCCCGACCTGTTCATGAGGCGGGTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAG 295457 Query 19666 CGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTA 19725 ||| || || ||||| ||| || || |||| |||| | | | ||| | || Sbjct 295458 CGAGTGTCCCGGCCTGGACGAGTGCTGGGGGGAGGAGTTCGAGACGCTCTACACAAAGTA 295517 Query 19726 CGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCT 19785 || || |||| ||| | ||||||||||| ||||| | | | ||| || | || | Sbjct 295518 CGAGGCGGAGGGGCGGGTGAAGAAGGTGGTGAAGGCCCAGCAGCTGTGGTACGCCATCAT 295577 Query 19786 CAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAA 19845 | | ||| ||||||||||| || |||||| ||||||||||||| ||| ||| Sbjct 295578 CGAGTCGCAGACGGAGACCGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAA 295637 Query 19846 GTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGA 19905 | || ||| ||||| | ||| | ||||||| |||||| || || || | |||| Sbjct 295638 GAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACCGAGGTGGTGGA 295697 Query 19906 GGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTT 19965 | | ||| ||||||| ||||| || || ||||| ||| | ||| | | Sbjct 295698 GTTCACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTA 295757 Query 19966 CGTCAAGGCC---TCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCAC 20022 ||||| | || |||||||||| || || || || ||| ||| || Sbjct 295758 CGTCACGCCCGAGCGGACCTTCGACTTCAAGAAGCTGGCCGCCGTCACCAAGGTGATCGT 295817 Query 20023 GCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCG---ACCGAGGCGGCGCGCAA 20079 | || ||||| |||||||| |||| |||||| ||||||| | |||| Sbjct 295818 GAAGAACCTGAACAAGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCGC-- 295875 Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 || || | |||||||||||| |||| |||||||||||||| |||||||||| ||||| Sbjct 295876 -TCCAACAAGCGCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCAT 295934 Query 20140 GATGCTCGGCCTCTCATTCGACGATC-CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCG 20198 || | || | | ||||| || | || |||||| ||||||| ||||||| Sbjct 295935 CCTGATGCGCTACCCGTTCGA-GAGCGCCGAGGCGCAGCTGCTCAACGTCCAGATCTTCG 295993 Query 20199 AGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 || || | |||||||| || || || ||||| || || ||| ||||| | Sbjct 295994 AGACCATCTACCACGCCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGAGCTGGGCCCCT 296053 Query 20259 ACGAGACGTTCAAGGGGTCGCCCG-CGTCCGAGGGTATCCTCCAGCCGGACATGTGGG-- 20315 ||||||||| | |||| ||||||| | ||| ||| | |||||| |||||||||| Sbjct 296054 ACGAGACGTACGAGGGCTCGCCCGTCAGCCG-GGGGGTGCTCCAGTACGACATGTGGGAG 296112 Query 20316 ----GCGTCACTGA-GAATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACC--CAC 20368 | ||| || || | | | ||| || |||| ||||| | || ||| Sbjct 296113 AAGACCCCCACCGACCTGTGGGACTGGAAGC-TGCTGAAGGAGAAGATC--GCCCGGCAC 296169 Query 20369 GGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATG 20428 || | | ||| |||| | || |||||||| |||||||| |||||||||||| || Sbjct 296170 GGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTG 296229 Query 20429 GGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 || ||||||||| | ||||| | ||||| | |||||||||| Sbjct 296230 GGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTAC 296271 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 20611 CCAGA--ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATC 20668 ||||| |||| ||| | | |||| ||| || ||||||||| | ||||||| | | | Sbjct 296517 CCAGACGACCTGAAGCAGCTGTACAAGACTGTCTGGGAAATCTCCCAGAAGACCGTGCTG 296576 Query 20669 GACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATG 20728 | |||||||| || ||||||||||||||||||||| |||||| || || | ||| Sbjct 296577 AAGATGGCGGCGGACCGCGGCGCCTACATCGACCAGAGCCAGTCTCTGAACATTCACATC 296636 Query 20729 GAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 | | || | | | |||||||| | |||||| | ||||||||| Sbjct 296637 GCCGAGCCAAACTACGGGAAGCTGACCAGCATGCACTTCTACGGCTGG 296684 >seq9909 Length=2276304 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| |||||||||||||||| ||| |||||||||||||| | || | ||||||| | Sbjct 1378307 CTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGT 1378248 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||||||||| || ||||| Sbjct 1378247 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 1378200 >seq51 Length=752366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| ||||| || ||||||||||||||||| || ||| || | |||||| Sbjct 77675 GCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATTTGCTGCCATCTACTGGCTG 77616 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||||||||||||||| | | |||||| || || ||| | |||| ||| Sbjct 77615 AAGAAGAGAGGCCTCATGCCGGGCCTTACCTACTCCAATGAACTCATTAGCAGGGATGAG 77556 Query 60111 G 60111 | Sbjct 77555 G 77555 >seq348 Length=361584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| || ||||||||||| ||||||||| || || |||||||| || ||| | || Sbjct 109549 CGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 109490 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| ||| ||||||||| || | | ||||||| Sbjct 109489 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 109440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548455000219200