Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10130 306 4e-78 >seq10130 Length=961328 Score = 306 bits (338), Expect = 4e-78 Identities = 541/777 (70%), Gaps = 14/777 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTAC 53251 |||||||||| | |||| |||||||| ||| | |||| | | ||||||||| Sbjct 294908 TCATGCGCGTGTCGGTGGGGATCCACGGCCGGGACATCGACGCC-GCCATCGAGACGTAC 294966 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | || | |||| || ||||||||| |||| || || |||||||| || || Sbjct 294967 AACCTGCTGTCGGAGAAGTGGTTCACGCACGCCTCGCCGACGCTCTTCAACGCCGGCACC 295026 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || | || ||| |||| |||||||||||| |||| |||||||| ||| ||||| ||| Sbjct 295027 AACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGC 295086 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| ||||||||| |||| |||| ||||||||||| | | || || ||||| | Sbjct 295087 ATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGCGTG 295146 Query 53432 -CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | || | | |||| ||| |||| ||| || || |||||| | || | Sbjct 295147 GCGGTGAGCTG-CATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCCAA 295205 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || | ||||| ||||| || |||| ||||||||| ||||| ||||| ||||||| || Sbjct 295206 CGGCCTGGTGCCGATGCTGCGGGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGG 295265 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||| | || | |||||||| ||||| |||||||||||| |||| | | || Sbjct 295266 CAACAAGAGGCCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGACGTGTTCGA 295325 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 || || |||||| ||| ||| | || ||| ||| | | ||||| || || Sbjct 295326 CTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAGCGGGCCAGGGACCTCTTCTA 295385 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || |||||||| || ||||| |||||| |||||||| || |||| |||| || Sbjct 295386 CGGC-CTGTGGATCCCCGACCTGTTCATGAGGCGGGTGGAGAGCAACCAGGACTGGTCCC 295444 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAG 53788 ||||||| || | |||||| |||||||| | | ||| || || |||||||| |||| Sbjct 295445 TGATGTGTCCCAGCGAGTGTCCCGGCCTGGACGAGTG-CTGGGGGGAGGAGTT---CGAG 295500 Query 53789 A---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 | | || | ||||| | |||| || |||||| ||| ||||| | || Sbjct 295501 ACGCTCTACACAAAGTACGAGGCGGAGGGGCGGGTGAAGAAGGTGGTGAAGGCCCAGCAG 295560 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || ||| || || ||| |||||| || ||||| |||||| ||||||| Sbjct 295561 CTGTGGTACGCCATCATCGAGTCGCAGACGGAGACCGGCACGCCCTACATGCTCTACAAG 295620 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || | |||| |||||||||||| ||||| | ||| |||||| | |||||| Sbjct 295621 GACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 295677 Score = 122 bits (134), Expect = 1e-22 Identities = 350/527 (66%), Gaps = 41/527 (8%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTC 55194 |||||||||| ||||||||| | || ||||||||| | || || | |||| || Sbjct 295821 GAACCTGAACAAGGTCATCGAGATAAACTACTACCCGGTCCCCGAGGCCGAGCGC---TC 295877 Query 55195 CAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGAT 55254 |||| || ||||||||||||| |||||| || ||||| |||||||| |||||| | Sbjct 295878 CAACAAGCGCCACCGGCCCATCGGCATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCT 295937 Query 55255 GCTCGGATTGCCCTTCGA---CTCGGA-----ACCTGCTCGAGAAATTAACCAGGACATC 55306 | | | | || ||||| | | || | |||||| || | |||| ||| Sbjct 295938 GATGCGCTACCCGTTCGAGAGCGCCGAGGCGCAGCTGCTC---AACGT--CCAG---ATC 295989 Query 55307 TTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATG-AGCGAGG 55364 ||| || | ||||||| || ||||| |||| || | ||||| | ||| || Sbjct 295990 TTCGAGAC-CATCTACCACGCCGCGCTGGAGGCCAGCTGCGAGCTGGCGGCGGAGCT-GG 296047 Query 55365 GGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTAT 55424 | |||||||||||| | | ||||| | | ||| | ||||||| ||| | | Sbjct 296048 GCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCCGGGGGGTGCTCCAGTACGACATGT 296107 Query 55425 GGGGCAAGTCTGACCCCA------TGTTTGAC---AAGTTG---AAGCATGACATTCACT 55472 ||| ||| | ||||| ||| ||| ||| || ||| | | || | Sbjct 296108 GGGAGAAGAC---CCCCACCGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCC 296164 Query 55473 TGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 | ||| | | ||| |||||| |||| || ||||| ||||| || || || |||| Sbjct 296165 GGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGA 296224 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||| | ||||| | |||||||||| |||||| || Sbjct 296225 TCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCC 296284 Query 55593 TAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG 55639 | | || ||||| || ||||| |||||| ||||||||||| Sbjct 296285 TCTCCGGCGAGTTCCAGATCGTCAACCCTCACCTCCTCAAGGACCTG 296331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547146366764000