Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10130 289 3e-73 seq483 163 3e-35 seq9955 161 1e-34 seq9909 107 2e-18 >seq10130 Length=961328 Score = 289 bits (320), Expect = 3e-73 Identities = 838/1269 (66%), Gaps = 48/1269 (4%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | | ||| | |||| || || ||| || |||||||||| Sbjct 296110 CCCACATGTCGTACTGGAGCACCCCCCGGCTGACG--GGCGAGCCCTCGTACGTCTCGTA 296053 Query 80598 CGGGCCC---TCCGTCTTGGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAAT 80651 |||||| |||| | |||||||| || | ||||| | || ||||| || || Sbjct 296052 GGGGCCCAGCTCCGCC---GCCAGCTCGCAGCTGGCCTCCA---GCGCGGCGTGGTAGAT 295999 Query 80652 GCACTCAAAGAC---GCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGC 80707 | ||| |||| | | ||| || || |||||| | | ||||||| ||| Sbjct 295998 GGTCTCGAAGATCTGGACGTTGAGCA----GCTGCGCCTCGGCGCTCTCGAACGGGTAGC 295943 Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767 ||||| ||||| |||| ||||| ||||| ||||||||| |||| || |||||||||| Sbjct 295942 GCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCT 295883 Query 80768 TGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 |||| || ||||||||||| || | ||||| |||| | |||||||| |||||||| Sbjct 295882 TGTTGGAGCGCTCGGCCTCGGGGACCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGT 295823 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC----- 80882 | | ||| || || | || |||| |||||||| ||| | | Sbjct 295822 TCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGAAGTCGAA--GGTCCGCTCGGG 295765 Query 80883 CTTCAC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCA 80940 | | || | ||| | ||| | ||| ||||| ||||| ||||||||||| || | Sbjct 295764 CGTGACGTACATGTTG--AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC--CT 295709 Query 80941 T-CT-GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTT 80998 | || || ||||| || | || ||||| | || |||| || || |||||||| | Sbjct 295708 TGCTGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 295649 Query 80999 TCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGA 81058 |||||| |||| |||||| |||||||||||| |||||| || || |||||||| Sbjct 295648 GCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCG 295589 Query 81059 CCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGC 81118 ||| |||| || |||||||| ||| | || | ||||| |||||||| | | Sbjct 295588 TCTGCGACTCGATGATGGCGTACCACAGCTGCTGGGCCTTCACCACCTTCTTCACCCGCC 295529 Query 81119 CTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGG 81177 | || ||| | ||||| | ||| ||| || ||||||| | || || ||| Sbjct 295528 CCTCCGCCTCGTACTTTGTGTAGAGCGTC-TCGAACTCCTCCCCCCAGCACTCGTCCAGG 295470 Query 81178 TCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATG 81237 | || |||||| | || ||||||||| |||||| || | |||| || | ||||| Sbjct 295469 CCGGGACACTCGCTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATG 295410 Query 81238 AAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCC 81297 || ||| |||||||| ||| || ||| ||||| | | ||| |||||| | ||| Sbjct 295409 AACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCC 295350 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 ||| || ||| || ||||| | | ||| ||||| |||||||| |||| | Sbjct 295349 GTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATG 295290 Query 81358 GCGATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAA 81413 |||| | | || || | ||| ||||||| ||||| ||||| || ||| | Sbjct 295289 GCGA-AGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTA 295231 Query 81414 TACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCC 81473 || |||| ||| || | | || | || | ||||| || || |||| || Sbjct 295230 GACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCC 295171 Query 81474 CTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533 | | | ||| | ||| | | | |||||||| || | | |||| || || | || Sbjct 295170 CGTCGAGCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGC 295111 Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAA 81593 ||| | || | || || || || ||||||||||| || | |||||| | |||| ||| Sbjct 295110 GCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAA 295051 Query 81594 ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAAT 81653 ||||| |||| ||| || | || | |||||| ||||| || || || | ||||| | Sbjct 295050 GCAGCTGGACAGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT 294991 Query 81654 GAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGT 81712 ||| | | |||| ||||| || || || || | |||| | || || |||| Sbjct 294990 GAACCACTTCTCCGACAGCAGGTTGTACGTCTCGATGGCGGCGTCG-ATGTCCCGGCCGT 294932 Query 81713 GAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCGCCTGCGTTCAGGTACA 81772 | || || | | || ||||| | ||||| ||| ||| |||| | | ||| || | Sbjct 294931 GGATCCCCACCGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGA 294872 Query 81773 TCTTCTGCA 81781 ||||| ||| Sbjct 294871 TCTTCAGCA 294863 >seq483 Length=217099 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||| | | Sbjct 215788 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTGGAGCCTAGC 215729 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || || || |||||||||||||| || || || |||||| Sbjct 215728 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 215669 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 215668 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 215609 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| || || || ||| | ||||| | ||||| || Sbjct 215608 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGGCCA 215559 >seq9955 Length=1786201 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| || || || ||||| ||| | | Sbjct 4297 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4238 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| ||||| || |||||||||||||| || || || |||||| Sbjct 4237 GACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 4178 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| | Sbjct 4177 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACACC 4118 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || | || ||| | ||||| | ||||| Sbjct 4117 ATCCAGAAAGAATCCACCCTCCGCCTGGTCCTCCGTCTCAGGGGTGG 4071 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || |||| ||| | | Sbjct 4069 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGTAGGTGGAGCCCAGC 4010 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| || || || |||||| Sbjct 4009 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3950 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| || Sbjct 3949 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 3890 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | ||||| | ||||| Sbjct 3889 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGG 3843 >seq9909 Length=2276304 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| | |||||| ||||||| ||| ||||| || || ||||| |||| |||||| | Sbjct 1378308 ACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGG 1378249 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| ||||||||| || || ||||| ||| |||| Sbjct 1378248 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGCGACT 1378189 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||| | ||||| Sbjct 1378188 CGATGATGGCGTGCCAGAGCTGCTGAGCCCTCACCAC 1378152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570237828001600