Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq9958 143 4e-29 >seq9958 Length=1759816 Score = 143 bits (158), Expect = 4e-29 Identities = 430/652 (66%), Gaps = 24/652 (4%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTT 13741 ||| |||| | ||||| || || | ||| || ||||||||| | |||||||||||||| Sbjct 1380488 GGAGGAGGCAAATTTTCCTATTGCATTCTCCATGGTGATCCACAATAAGATCGAGATGTT 1380429 Query 13742 CGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTC 13801 || || |||||| | | || ||||| || || ||| | ||||| || ||||| ||| Sbjct 1380428 TGAACGACTCCTGCGATCTATTTACGCTCCTCAAAACGTGTACTGTGTGCACGTTGACCA 1380369 Query 13802 CAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 ||||| | || || || | ||| || | ||| | ||||| || || Sbjct 1380368 GAAGTCTTCTCCG--GATTTTCACAGGGCTGTTCAGAACATAGTTTCCTGCTTTCCCAAT 1380311 Query 13860 GTGGCCCTGGCCCACCGGCT-GCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGC 13918 || | | | | | | | || |||||||||| || ||| || |||||||| Sbjct 1380310 GTCTTCATATCTAGCAAATTAGAAAGA-GTGGTGTACGCTTCGTGGTCCCGAGTGCAGGC 1380252 Query 13919 CGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAA 13978 ||||| | ||||||| |||||| ||| |||| | ||||| ||||| || || Sbjct 1380251 AGACCTGAACTGCATGAACGACCTGCTGCAATCCGACGTCCAATGGAGATACCTTCTGAA 1380192 Query 13979 CCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGC 14038 | || |||| ||||| || |||| |||||| |||||| ||| ||| ||||| Sbjct 1380191 CACCTGTGGGACAGACTTTCCCATCAAAACCAACAGGGAGATGGTGATGGCTCTGAAATT 1380132 Query 14039 CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC--CAACCACAAGCTGCACCGC 14096 ||| ||| | |||| ||| |||| ||| || || || |||||| | | || Sbjct 1380131 CCTCAACGGGAGGAACAGCCTAGAGACCGA--ACAAACCAGCAGCCACAA---GAAACGA 1380077 Query 14097 ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGT--GGTGGTCAACACCGGCAGGAACA 14154 | || || ||| | || || || | | | || || || ||| || | Sbjct 1380076 CGCTGGGAGTACCACTACGAGGTCACCGACACCATCCGGGGG-----ACAGGCGAGAGGA 1380022 Query 14155 AGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCC 14214 || ||||||||| |||| | |||||| || |||||||||| ||||||| |||| | Sbjct 1380021 AGAGCCCGCCGCCCATCAGCACCCCCATGTTCTCGGGAAACGCGTACTTTGTGGTCTCGA 1379962 Query 14215 GGGAGTTCGTGGACTTCGTCCTCAAGGAC-GAGCCG-GTGGCCCTGCTCATGCACTGGTT 14272 ||| || ||| | | ||| | | || ||| | | | || ||||| | ||| Sbjct 1379961 GGGCCTTTGTGAAATACGTGGTGCGGAACAGAGAGGCGCAGAACT--TCATGGAGTGGGA 1379904 Query 14273 CGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATG 14324 |||||||||||||||| ||||||||| |||||||||| | ||||| ||| Sbjct 1379903 GAAGGACACGTACAGCCCAGACGAGCACATGTGGGCCACGCTTCAGAGGATG 1379852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658655375436800