Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq297 141 8e-29 >seq297 Length=3848896 Score = 141 bits (156), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| || ||||| || ||||| |||||| |||||||||| ||||||||| |||| Sbjct 2866427 GACCTCCCGCTCATGGCCCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTACGTCTGCGAC 2866486 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||||||||||| ||||| || || || || | |||||||| | |||||||| || Sbjct 2866487 -GGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGCCTGGGGGTGCCTTT 2866545 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || || ||||| ||||||||||| || Sbjct 2866546 TAACATCGCCAGCTATGCCCTTCTCACCTACATGATCGCACA 2866587 Score = 141 bits (156), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| || || || || || ||||| || |||||||| | ||| Sbjct 2866587 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGCACCCCCAGGCCC 2866528 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| |||||||||||||| |||| ||||||||| || Sbjct 2866527 ATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCC-GTCGCAGACGTAGAACTG 2866469 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| |||||| ||||| || ||||| || ||||| || Sbjct 2866468 GCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAGCGGGAGGTC 2866427 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || ||||||| || | ||| |||||||| | ||| ||| || Sbjct 2862261 GGCGTGAAGATCTGGGATGCCAACGGGTCCCGCGCCTTCCTGGACAACCTGGGCTTCACA 2862320 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 | |||||||| ||| |||| || || ||||| ||||||||||| |||||||| || Sbjct 2862321 GAGAGAGAGGAGGGGGACCTGGGACCTGTGTACGGCTTCCAGTGGAGGCACTTTGGCGCA 2862380 Query 34442 GAGTAT 34447 |||||| Sbjct 2862381 GAGTAT 2862386 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 |||||| || |||||||| ||||||||||| ||||| || || |||| ||| |||||||| Sbjct 2862386 ATACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCCCCCTCCTC 2862327 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | || ||| ||| | |||||||| ||| | || ||||||| || ||||||||||| Sbjct 2862326 TCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCCCAGATCTT 2862267 Query 7018 CACCCC 7023 ||| || Sbjct 2862266 CACGCC 2862261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448205358609600