Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq483 174 4e-38 seq9955 158 3e-33 seq10159 95.1 3e-14 >seq483 Length=217099 Score = 174 bits (192), Expect = 4e-38 Identities = 170/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 215577 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 215636 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||||||| Sbjct 215637 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 215696 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||| || ||||||||||| ||| || ||||| || ||||| Sbjct 215697 TGGATCTTGGCTTTCACATTCTCGATGGTGTC---GCTAGGCTCCACCTCTAGGGTGATG 215753 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| ||||| | |||||| || Sbjct 215754 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 215791 >seq9955 Length=1786201 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3858 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 3917 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || |||||||| || | || ||||||||| Sbjct 3918 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3977 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || ||||||||||| | || |||| || ||||| ||| Sbjct 3978 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGTC 4037 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 4038 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||| | || ||||| ||||| |||||| | || || | ||||| | |||||| Sbjct 4086 AGGACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCT 4145 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || |||||||| || | || ||||||||| Sbjct 4146 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4205 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || |||||||| | || ||||| || ||||| ||| Sbjct 4206 TGGATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 4265 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||||| Sbjct 4266 TTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 4297 >seq10159 Length=871522 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| | || ||| ||||||||| || ||| Sbjct 127033 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGTCTAAGAATGGAAAAGAGACATAAC 126974 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| |||| ||||| || |||| ||| | ||| ||| | ||| |||| |||| | Sbjct 126973 TACGTGAGGAAAGTGGCCGAGACCGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 126917 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || || || || || || || || ||||| |||| | ||| Sbjct 126916 AATGTGGCGGGAATGGTCTTAGCTGGCTCTGCTGATTTTAAGACTGAGCTTAGCCAGTCT 126857 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 126856 GACATGTTTGACCC 126843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159000810355700