Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq483 127 5e-24 seq10180 122 2e-22 seq9955 122 2e-22 >seq483 Length=217099 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| || | || || | |||||| Sbjct 215577 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 215636 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || |||||||| Sbjct 215637 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 215696 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| | ||||| |||| ||||| ||| Sbjct 215697 TGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTC 215756 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 215757 TTGCCAGT 215764 >seq10180 Length=16526 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || || |||| || ||||| ||||| || || || ||| | ||||| Sbjct 5620 CCAAATTTATAATGTAATCGTTACAGCACATGCATTTGTAATAATCTTTTTTATAGTTAT 5679 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| |||| || || ||||| ||||||||| | || ||| | ||||||||||| || || Sbjct 5680 GCCTATTATAATTGGTGGTTTTGGAAATTGACTAGTCCCTCTTATGATTGGTGCCCCAGA 5739 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || |||||||| | | || |||||||| || ||| |||| || || || || || || Sbjct 5740 CATAGCTTTTCCTCGAATAAATAATATAAGCTTCTGACTACTCCCACCCTCATTTTTACT 5799 Score = 111 bits (122), Expect = 4e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||| ||||||||||||||||| || || || ||||| |||||||||| Sbjct 6193 TTCTGGGTGACCAAAGAATCAGAATAAATGTTGGTATAGAATTGGATCTCCTCCGCCTGC 6134 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||||| ||||||| |||||||| Sbjct 6133 CGGATCAAAAAATGTAGTATTTAAATTTCGGTCAGTTAA 6095 >seq9955 Length=1786201 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| || | || || | |||||| Sbjct 3858 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 3917 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| ||||| || | || ||||| || || || || |||||||| Sbjct 3918 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 3977 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||||||||| || ||||| | | ||||| ||| Sbjct 3978 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGTC 4037 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 4038 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||| |||| ||||||||||| |||| |||| || | || || | |||||| Sbjct 4086 AGGACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCT 4145 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| ||||| || | || ||||| || || || || |||||||| Sbjct 4146 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4205 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || |||||||| || ||||| || | ||||| ||| Sbjct 4206 TGGATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 4265 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | || | |||||| Sbjct 4266 TTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 4297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192375656664920