Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq297 143 2e-29 >seq297 Length=3848896 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | ||||||||||||||||| ||| Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| | || | |||||| ||||| || || ||||| ||||||| Sbjct 2866539 ACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 2866480 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| || | ||| ||||| || || ||||||||||| Sbjct 2866479 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAG 2866436 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| ||||||||||| ||||| || || | |||| Sbjct 2862373 AAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCCCCCTCCTCTCTCTCTGTGAAG 2862314 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||| | | ||| |||||||| ||||||||||| || || ||||| Sbjct 2862313 CCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCCCAGATCTTCACGCCTTTCTCT 2862254 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| |||| ||||| || || Sbjct 2862253 GACAGCTCCTTGGCATTTGTTGATCC 2862228 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 |||||||||||||||| |||| |||||| |||| ||| |||||||| ||||||||| || Sbjct 2866355 CTTTGGGGTTCCAGGCGCACATGATGATCCGCCGGTCCTCTGGGTTTTTCCTGATGGTGT 2866296 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | |||| |||||||| ||||| || || ||||| |||| Sbjct 2866295 CGATGACGTTCTGCAGCTGGTCCACGCCTTGTCCAGAGTAATCTG 2866251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406112807839480