Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq9951 309 2e-79 seq297 138 8e-28 >seq9951 Length=1867821 Score = 309 bits (342), Expect = 2e-79 Identities = 301/384 (78%), Gaps = 4/384 (1%) Strand=Plus/Minus Query 68936 AGTTCCAGAGTATCTGGCATTAGTGCGACAGAAGATGTCT--GAATATAGTCACAACAGC 68993 || ||||||||||||||| | ||| | ||| | | | ||||| | || ||| || Sbjct 1429358 AGGTCCAGAGTATCTGGCGTGGGTGTCAGAGATCGTTTGTACGAATAAA-TC-CAAGAGG 1429301 Query 68994 TTCCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAG 69053 ||| |||| | ||||| | || ||| |||||||||| ||| || |||||||| ||| Sbjct 1429300 TTCAGCCTAGAGAGTCCTGTTGGAGCCATGCTGACCATAGCACCTGTGGAGGACACGGAG 1429241 Query 69054 TATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTG 69113 || | ||||||||||| |||||||||| |||||| ||||| ||| | |||||| |||| Sbjct 1429240 TACAGTGACAGGCCTGCGGTGGTGAACGCATGGGGGAAGTTCTATCTTCCCACCACCGTC 1429181 Query 69114 ACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTG 69173 |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| || Sbjct 1429180 ACGATGCAGGTCATCGGTTACGTGACGGGAACCTCATACCCTTGTGACCAGCTTGTCTTG 1429121 Query 69174 ATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233 ||||| |||||||||| ||| |||||||||| |||||||||||||||||| || |||| Sbjct 1429120 ATGACATGCGAGGACCGGAAAGTGTACGGCTTCGACGGAGACGAGCTGCATCTGCTGGCC 1429061 Query 69234 AACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTAT 69293 | | | | ||| || || || || ||||||| ||| ||| | |||||||||| Sbjct 1429060 TCCAGCCCCAAGCAGTTGTCTGAGGAGGGCATAGCCTGCCCTCCATCCAAGAGCTATTAC 1429001 Query 69294 CATGGGGAGGCCTTCAAACATATG 69317 ||||| |||||||||||| | ||| Sbjct 1429000 CATGGCGAGGCCTTCAAAGACATG 1428977 Score = 140 bits (154), Expect = 2e-28 Identities = 112/134 (84%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 ||||| ||||| ||||||| ||||| ||||||||||| ||| ||| ||||||||||||| Sbjct 1428891 GACCAGCGAGGATTGGGAGACGGTGAAGCAGAGCCCTGTGGGGAAACGGTTGGATGAGGA 1428832 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 |||||| || ||||||| ||||| ||||| | || |||| |||||| ||| ||||||| Sbjct 1428831 GCATCACAATCTGGTGGCTTCTCACAAATCCTCCCTCCTGAAGAATCTGAGACTCAGCAG 1428772 Query 69437 AC-AAAATAGAGGT 69449 || |||| |||||| Sbjct 1428771 ACAAAAACAGAGGT 1428758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 69015 GGGTCCAAACTGACCATAGGACCCG--TTGAGGACACAGAGTATAAAGACAGGCCTGCAG 69072 || |||| ||||| |||| || | | || ||||| || | ||||| || | | Sbjct 1361206 GGCTCCATTCTGACGATAG--CCAGGCTGGAAGACACCATTTACAGAGACAAACCGGATG 1361149 Query 69073 TGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTT 69132 |||||| || ||||| | |||||| ||||| || | |||||||| |||| Sbjct 1361148 AGGTGAAGGGTTGGGGGATGTTTTACCTCCCCGAGATGGTCAACATGCAGGTTGTCGGCG 1361089 Query 69133 ATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGA 69192 ||| || ||||| | || | |||| ||||||| |||||||||||||||||| | | Sbjct 1361088 TAGTGGACGGTACTCCGTGCCTGTCTGACGAGCTTGTACTGATGACCTGCGAGGACAAAA 1361029 Query 69193 AGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233 | | |||| ||| ||||| || ||| |||| |||||||| Sbjct 1361028 GGCTTTACGCCTACGACGGGGAGGAGTTGCACCTGGTGGCT 1360988 >seq297 Length=3848896 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| ||||| || | ||||||||||||||||| || Sbjct 2866599 AGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAAAGGC 2866540 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||||||| | || | |||||| |||||||| || ||||| || |||| Sbjct 2866539 ACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 2866480 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 2866479 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAG 2866436 Score = 134 bits (148), Expect = 1e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27490 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549 ||||| | |||||||| || || |||||||| ||||| |||||||| ||||||||||| Sbjct 2862394 ATGTCTTTATACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCC 2862335 Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609 ||||| || || | ||||||| ||||||| ||| | | ||| |||||||| ||| Sbjct 2862334 CCCTCCTCTCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCC 2862275 Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 2862274 CAGATCTTCACGCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 2862228 Score = 102 bits (112), Expect = 6e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 ||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||||| || Sbjct 2866355 CTTTGGGGTTCCAGGCGCACATGATGATCCGCCGGTCCTCTGGGTTTTTCCTGATGGTGT 2866296 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 | | | |||| |||||||| ||||| || || ||||| ||| Sbjct 2866295 CGATGACGTTCTGCAGCTGGTCCACGCCTTGTCCAGAGTAATCT 2866252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369461355703580