Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10130 196 7e-45 >seq10130 Length=961328 Score = 196 bits (216), Expect = 7e-45 Identities = 1200/1915 (63%), Gaps = 21/1915 (1%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 ||||| ||||| || || || || || || || || | || | || ||||| || || Sbjct 296321 AGGAGGTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTG 296262 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 ||||| || | || | || || ||||| |||| || || || || || || || ||| Sbjct 296261 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGC 296202 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880 || || |||| || | || || || | || || ||| || || || || Sbjct 296201 ATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGC 296142 Query 75881 TTCCAATCCCAAAGATC--TGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||||| ||||| || || || ||| | | ||||| | ||||| || || | || Sbjct 296141 TTCCAGTCCCACAGGTCGGTGGGGGT-CTTC-TCCCACATGTCGTACTGGAGCACCCCCC 296084 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 ||| | || || | || || ||||| | || || | || || ||||| | Sbjct 296083 GGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCCGCCGCCAGCTCGCAGC 296024 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTT 76058 | ||||| | ||| ||| || || || ||||| |||| || || ||||| | Sbjct 296023 TGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCT 295964 Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAA 76118 | || || || || || | | || || || || || || || ||||| || || | Sbjct 295963 CGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGA 295904 Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 | || || || | || | ||| ||||| || || || || | ||||| || || | Sbjct 295903 TGCCGATGGGCCGGTGGCGCTTGTTGGAGCGCTCGGCCTCGGGGACCGGGTAGTAGTTTA 295844 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 | || || | || || || || | || | || || ||| | || || | Sbjct 295843 TCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGTGACGGCGGCCAGCTTCTTGA 295784 Query 76239 AATCAAATTTTCCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAA 76295 | || || | | || | || |||| || || || || || || || || || | Sbjct 295783 AGTCGAAGGTCCGCTCGGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGA 295724 Query 76296 CGGCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 |||| ||||| | | || ||| | | | | ||| ||||| || || || ||||| Sbjct 295723 CGGCCACCTCGTCCTTGC--TGGTGAACTCCACCACCTCGGTGCAGAGGTTGCTGCACTT 295666 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 ||| || || || || || ||||||||||| ||| || | |||||| || || | | Sbjct 295665 GATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTA 295606 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTA 76472 || || || || || |||| || ||||| || | | ||| | | || | | || | Sbjct 295605 GGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCACA-GCTGCTGGGCCTTCA 295547 Query 76473 TTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTC 76532 | || ||| ||| || || | ||| || | | || || || || | Sbjct 295546 CCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGAGCGTCTCGAACTCCTCCC 295487 Query 76533 CCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTT 76592 |||| || |||| || ||||| || | |||||||||| ||||| || | Sbjct 295486 CCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGACACATCAGGGACCAGTCCTGGTTGC 295427 Query 76593 CCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTT 76651 || ||||| |||| || || || || ||||| || || || || || || | || Sbjct 295426 TCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAG-GCCGTAGAAGAGGTCCCTGGCC 295368 Query 76652 CTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGC 76711 | | || || || || || ||||| || || || ||||| || | | || | ||| Sbjct 295367 CGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGC 295308 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 || || || || || || || | | || || | || || || ||||| || | || Sbjct 295307 CACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTTGCCGCCCTGGTCCACGTAG 295248 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTT 76831 | ||| ||||| || || || | || ||| || | | |||||| || | || || || Sbjct 295247 CGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCCGTTGGAGTTGCCGTTGGTG 295188 Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 || | || || || || | || || || | | | ||| || || || ||| Sbjct 295187 CCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTCACCGCCACGCCGATGCCGCCGGCC 295128 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 || ||||| || || || | || | ||||| ||||||||||| || || || ||| Sbjct 295127 GACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCC 295068 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAAT 77011 ||||| || || || ||||| |||| || | | || || || || || | Sbjct 295067 TTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTGCCGGCGTTGAAGAGC 295008 Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 || || || || || |||||||| || || || || || ||||| || || || | || Sbjct 295007 GTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCGATGGCGGCG 294948 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || || |||| || || || || | || ||||| | ||| ||||| || || || Sbjct 294947 TCGATGTCCCGGCCGTGGATCCCCACCGACACGCGCATGAGCATGTGCTGCGGCCGCTCG 294888 Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 77191 | ||| || || |||| || ||| || |||| || || || || || || Sbjct 294887 GCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAAG 294828 Query 77192 TTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTA 77251 ||||| || ||||| | ||| | || || | || || || |||||| | | Sbjct 294827 TTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGAGTTGAGGCGGTCCTTGTTCTCCAGG 294768 Query 77252 ACAATATCCA---TGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTA 77308 || || |||| | | || || | || || || | || || || || Sbjct 294767 ACGATGTCCAGCGTCTCCTTG---GAGACCATGGGGGAGTGGCGGCCGTTCAGGGGGTTG 294711 Query 77309 ACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGA 77368 || ||||| | | ||| ||||| |||||||| || | || || || |||||||| | Sbjct 294710 ACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTTCTTGGTCTCCTTGTGGATG 294651 Query 77369 TTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTG 77428 || || ||||| || || || || || || || ||||| || || | || ||| |||| Sbjct 294650 TTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAGTCGGGGTGCTTGGTGGTGAGGGTG 294591 Query 77429 GCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCT 77488 || || || ||||| || | || || | || | || || || ||| | || || || Sbjct 294590 GCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACGGTGGTGACGCCGCTGTACAGGCCC 294531 Query 77489 TGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACAT 77548 || || || ||||||| || | | || || || || || | ||||| || || || Sbjct 294530 TGGATCACCTTCATGGTGATCTGCGTCGGGTCCACGAAGTCCGCGTTCAGGCCGTAGCAC 294471 Query 77549 AATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTCTCCTTACATCCAT 77603 | || || || || ||||||||||| |||||||| ||||| | ||||| Sbjct 294470 AGCTTCTGTATGCGGGACGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 294416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712843679097600