Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9955 122 2e-22 seq483 122 2e-22 >seq9955 Length=1786201 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || ||||| || ||||||||||| || | | || Sbjct 3848 CCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3907 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 3908 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3967 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || ||| |||||| |||| | | |||| ||| || | || Sbjct 3968 CTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAG 4027 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||| ||||||| |||||| Sbjct 4028 GGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || | || || || ||||| |||||| |||| || | | || Sbjct 4076 CCTGAGACGGAGGACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGT 4135 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 4136 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 4195 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || ||| ||| |||| | | |||| ||| || || || Sbjct 4196 CTCCTTGTCCTGGATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAG 4255 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| || |||| ||||| Sbjct 4256 GGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 4297 >seq483 Length=217099 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || ||||| || ||||||||||| || | | || Sbjct 215567 CCTGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 215626 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 215627 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 215686 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || ||| ||| |||| | | |||| | ||| || || || Sbjct 215687 CTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAG 215746 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||| ||||| || |||| |||||| || Sbjct 215747 GGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 215791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153670305710780