Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq216 190 3e-43 seq10075 127 3e-24 seq9916 109 8e-19 >seq216 Length=444560 Score = 190 bits (210), Expect = 3e-43 Identities = 206/273 (75%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 8314 GACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTC 8373 ||| ||| | |||||||| ||| | | ||| | |||||||| |||| || | Sbjct 85484 GACATTGTTGCAGACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCGGCCGT 85543 Query 8374 TCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCC 8433 || || ||||||||||||||||||||| | |||||||| ||| || |||| ||||| Sbjct 85544 GCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGGGAGCAAATGGGATTTCCCATCAGGCC 85603 Query 8434 TTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACG 8493 ||| |||||||| |||||||||| ||| | || |||| || ||||||||||| | || Sbjct 85604 TTTCAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAGATGGCGTTCGTCCG 85663 Query 8494 GGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 |||||| ||||||| | |||| ||| |||||||| || |||||||| |||||||| | Sbjct 85664 GGGCTTCTCCACCAGCAGGCCGGGGTAGAGCTCCACTGCGTCGACGTCGCCGTAAAGCTC 85723 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | ||| ||| || || || ||||||||||| Sbjct 85724 CTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 85756 Score = 116 bits (128), Expect = 5e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| ||||| ||||| || ||| || ||| ||| || || || Sbjct 87057 TCACCAATAAGGATGAGGCGAGTTGTCTGAAAGAGTCTTTCATCATCCCAGTCGGGGTGA 87116 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||| ||| || ||||| | ||||||||| | |||||| || |||||||||||| Sbjct 87117 ACTCCCTTCAAAACGTCACACACTCGGTTGTGTTCACGGAGCCAAATGGTGGCGTACATC 87176 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||| || || |||||||| || ||||| || ||||| || | ||| | || || Sbjct 87177 AGGAGGCCGGGGACCAGGCCGAACGCCTCGTGGCCGACGGCGAAGCGCTGGGAGTCCGGG 87236 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || |||||| ||| | || || || || ||| || || |||| || Sbjct 87237 ACGTGTGGCGGATAGTGCATTTCGACACCAACATCCTTAACCAGTGGCGGGTACACCTCT 87296 Query 9472 CCGTCAATCATCTG 9485 |||| | |||||| Sbjct 87297 CCGTTTACCATCTG 87310 >seq10075 Length=1152483 Score = 127 bits (140), Expect = 3e-24 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 ||||||||| |||| ||| |||||| || || | ||| | | | |||| ||| Sbjct 709858 ACGGACACCACTTGGTGTTCAGACAGACAAGTTTCTTCAGAGTGGAGGTTTTGATGATGT 709799 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| ||| || || || |||||||||||||||||||| | |||||| |||| || Sbjct 709798 TGAAGCCCGTCTCGCCCCCAAAGGTGCTGGGCTTCCAGTATTCAGGGGAGTTGATGGGGT 709739 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 || | | |||||||| |||||||| || || |||| ||| | |||||||| || || | Sbjct 709738 TCCCAAGCAGGCCTTTTAGGGAGAAGGGGGCTCCCATCTCCACCATGCTCTCTCCAAATA 709679 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | | | |||| |||| || |||| || || |||| || | ||||| || || | || Sbjct 709678 TAGAGCTGGGTCGGGTTTTCTCCAGCAGGAGGCCGGGATAAAACTCCAGGGCGTCTATGT 709619 Query 8541 CTCCGTAAAG 8550 |||| || || Sbjct 709618 CTCCATAGAG 709609 >seq9916 Length=2151516 Score = 109 bits (120), Expect = 8e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| | || ||||| | || ||||| ||||||||||||||||| || || Sbjct 1734425 TTTACGATGTCAAAGCCCACTTTGCCCCCGAACGTGCTGGGCTTCCAGTATTGTGGAGAA 1734484 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||| ||||||||||||||| || || ||||||| || | ||||| Sbjct 1734485 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCCCCCATTTCCACCATGCTT 1734544 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| || || || || | ||| |||| ||| || |||| ||| | || | | Sbjct 1734545 TCTCCGAATATCGCCCCCGGCCGTGTCTTCTCCAACAACAACCCGGGGTAAAATTCGAGA 1734604 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 | |||| ||| ||||| || Sbjct 1734605 GTGTCGATGTCACCGTAGAG 1734624 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| |||||||| || ||||||||||| || ||||| || ||| ||||| Sbjct 1739195 TCACCGATGATGATGAGGCGGGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGC 1739254 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| | || || || ||||| || ||||||||||| | |||||||||| Sbjct 1739255 TCTGCTTTCAGGATGTCACAGACTCTGTTATGCTCCCTGAGCCACAGCGTGGCGTACAAA 1739314 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 | | ||||| | || || || |||| ||||||| |||| Sbjct 1739315 CTCAAACCAGGAAGGAGCCCGAACACCTCCTGACCGATGGCCA 1739357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716785577427200