Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq272266 334 2e-87 seq213072 327 3e-85 seq256110 255 1e-63 seq295602 105 1e-18 >seq272266 Length=497 Score = 334 bits (370), Expect = 2e-87 Identities = 379/500 (76%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6261 ACCTCGCCGCGCAGGGGCTCGTTAGTCCAGCAGAGTCTGCCGCCCTTGCGCGAGCAGAAC 6320 ||||| ||||| ||| ||||||| ||||||||||| | ||||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6321 GGGGGCAGCACATCAAGCAGATGCTCGTCAGGGGGGTCCGCATCGATGGTGAAGATGCCG 6380 || || || || ||| | |||||| |||||||| || || | ||| |||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6381 GGACAG-AGTTTCTTGTCAAAATAGTCTATTTTTGAGGATGCAT-CA--TCCAAGGCCAT 6436 || ||| || | ||| || |||||||| || | || | | || || | ||| Sbjct 124 GG-CAGCAGGCGCGCGTCGAAGTAGTCTATCTT---GCATCCTTGCAAGTCTAGCGCCTG 179 Query 6437 CTGCCACTCGCGGGCGGCCATTGCTCGCTCGTAGGGGTTGAGGGGCGGACCCCACGGCAT 6496 |||||| |||||||||| | || |||||||| |||||||| || |||||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6497 GGGATGCGTGAGGGCGGAGGCGTACATGCCGCAAATGTCGTAAACATAGATGGGCTCCGA 6556 ||| || ||||| |||||||||||||||||||||||||||||||| | || |||||| Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6557 GAAGATGCCGATGTTGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTATTC 6616 || || || | | || || || || | || ||||||||||||||||||||||| || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6617 ATACAACTCGTGCGAGGGGCCAAGAAGGCCGGGGCCGAAATTGGTGCGCTGGGGCTGCTC 6676 || | ||||||||||| | || ||| |||| |||| ||| | || ||||||||| Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6677 GGCGCGGAAAACAATCTGGCGAAAGATGGCGTGCGAGTTGGAGGAGATGGTGGGCCGTTG 6736 || ||| || | ||||| | |||||||| || |||||||| || ||||| || || || Sbjct 419 TGCTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6737 GAAGATGTTAAAGTGGGCGT 6756 ||||| ||| ||| ||||| Sbjct 478 GAAGACGTTGAAGCTGGCGT 497 >seq213072 Length=511 Score = 327 bits (362), Expect = 3e-85 Identities = 281/342 (82%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5916 TCGGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGATGTTGGCTTGCCCTGCC 5975 || || || || ||||||||||| | |||||||||||||||||| || | || || || Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 5976 GCAATGCTTTTTAGGAGACTTTCATCCATCTGGTCAGAAAAGACTAtttttttATTGTCA 6035 | |||| ||| ||| |||||||||||||||||||| | || ||||| | |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6036 AGCTTGGTGGCAAAGGAGCCATAGAGGGCGTTGGAGAGAAGCTTGGCGATGGATCTCATG 6095 |||||||||||||| || || |||||||||||||| || | |||||||||||| | || | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6096 GTCTGATTTTTGTCACGGTCGGCGCGCTCCTTGGCCGCGATGTTGAGCTGGACATATTCG 6155 || || |||||| | || |||||||||||||||||||||||||| ||||| || |||||| Sbjct 352 GTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6156 CGCGCGACACACTTCCATTCGGGAAAGACGGTGGTGCGCTCGTCGGGCACGATCCTGACG 6215 ||||| || ||| ||||||||||| |||||||||||||||||||||||| | ||| Sbjct 411 CGCGCAACGCACCGCCATTCGGGAA-GACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6216 CGCCAGCCGCGGTTATGCAGGGTGACCAGGTCCACGCTGGTG 6257 ||||| |||||||| ||||||||||| ||||| ||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 255 bits (282), Expect = 1e-63 Identities = 269/353 (76%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 10736 GAGGGCGAAGGGCTGGCGAGACTGGGGGCGCCTTCCCCGGAGCGACACCCCCGCGTGCAG 10795 |||||||| || |||||| | || || ||||| || || ||||| ||||| | |||||| Sbjct 355 GAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGCAG 296 Query 10796 CTGCAGAAGGACGTGCGCCCGGCGTACGTGCCTGCGCAAAACCTGTTCAGGGACCGCAGC 10855 ||| || || ||| |||||||||||| ||| |||||||| | |||||| Sbjct 295 CTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCGAG 236 Query 10856 GGGGAGGAGCCCGAGGAGATGCGCGACTGCCGGTTTCGGGCGGGCAGGGAGCTGCGCGAG 10915 || |||||||||||||||||||| || | ||| | || || | |||||||| | Sbjct 235 GGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCAT 176 Query 10916 GGCCTGGACCGCCAGCGCGTGCTGCGCGACGAGGATTTCGAGCCGAACGAGCAGACGGGG 10975 |||||| | ||| |||| |||||||||| ||||| || ||||| ||| || || ||| Sbjct 175 GGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGG 116 Query 10976 ATCAGCCCCGCGCGCGCGCACGTGGCGGCGGCCAACCTGGTGACGGCCTACGAGCAGACG 11035 || || ||||||||||| ||||||||||| ||| ||||||| || || |||||||||||| Sbjct 115 ATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGACG 56 Query 11036 GTGAAGCAGGAGCGCAACTTCCAAAAGAGTTTCAACAACCATGTGCGCACCCT 11088 ||||| |||||| |||||| ||| || || |||||||| ||||| || || Sbjct 55 GTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCACGTGCGTACGCT 5 >seq295602 Length=499 Score = 105 bits (116), Expect = 1e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 14554 CACGCTGTACCGCAGCTGGTACCTGTCCTATACCTACCGGGACCCTGAGAACGGGGTGCA 14613 ||| | |||||||||||||||||| | || | |||| | |||||| ||| ||| | | Sbjct 364 CACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCG 423 Query 14614 GTCGTGGACGCTGCTCACCACCCCGGACGTCACCTGCGGCGCGGAGCAAGTCTACTGGTC 14673 || ||||| ||||| ||| || ||||| ||||||||| ||||||| ||||||||||| Sbjct 424 CTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTC 483 Query 14674 GCTGCC 14679 | |||| Sbjct 484 GTTGCC 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111628915071988