Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000008.1 Length=35938 Score E Sequences producing significant alignments: (Bits) Value seq272266 881 0.0 seq256110 783 0.0 seq213072 589 5e-164 seq295602 464 1e-126 seq138774 205 2e-48 >seq272266 Length=497 Score = 881 bits (976), Expect = 0.0 Identities = 495/497 (99%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 6466 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 6525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6526 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 6585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6586 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 6645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 182 Query 6646 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 6705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 242 Query 6706 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGTAGAGGGGCTCTCTGAG 6765 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 243 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAG 301 Query 6766 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 6825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 361 Query 6826 TAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 6885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 421 Query 6886 TCGGAAGACTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 6945 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 480 Query 6946 GACGTTGAAGCTGGCGT 6962 ||||||||||||||||| Sbjct 481 GACGTTGAAGCTGGCGT 497 >seq256110 Length=496 Score = 783 bits (868), Expect = 0.0 Identities = 484/502 (96%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 11097 AGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCCCTCCTCCTACCG-CGT-CAGGA 11154 ||||||||||||||||||| |||||||| |||| |||| | ||||||| ||| ||||| Sbjct 495 AGAGCAAGAGCAGCGGCAG-CATGCAGG-CACC-TCCCN--CGCCTACCGGCGTTCAGGA 441 Query 11155 GGGGCGACATCCG-CGGTTGACGCGGCAGCAG-ATGGTGATTACGAACCCCC-GCGGCGC 11211 ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||| Sbjct 440 GGGGCGACATCCGGCGGTTGACGCG-CAGCAGGATGGTGATTACGAACCCCCCGCGGCGC 382 Query 11212 CGGGCCCGGCACTACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCC 11271 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 CGGGCCCGGCAC-ACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCC 323 Query 11272 TCTCCTGAGCGGTACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCG 11331 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TCTCCTGAGCGGCACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCG 263 Query 11332 CGGCAGAACCTGTTTCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAG 11391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 CGGCAGAACCTGTTTCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAG 203 Query 11392 TTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAG 11451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 TTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAG 143 Query 11452 GACTTTGAGCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCC 11511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 GACTTTGAGCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCC 83 Query 11512 GACCTGGTAACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTT 11571 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 82 GACCTGGTAACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTT--CAAAAAGCTTT 25 Query 11572 AACAACCACGTGCGTACGCTTG 11593 |||||||||||||||||||||| Sbjct 24 AACAACCACGTGCGTACGCTTG 3 >seq213072 Length=511 Score = 589 bits (652), Expect = 5e-164 Identities = 340/344 (99%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 6120 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 6179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 6180 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAGACAATCTTTTTGTTGT 6239 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 232 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG-TGT 289 Query 6240 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 6299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 349 Query 6300 GGGTTTGGTTTTTGTCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 6359 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 GGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 408 Query 6360 CGCGCGCAACGCACCGCCATTCGGGAAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 6419 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 409 CGCGCGCAACGCACCGCCATTCGGG-AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 467 Query 6420 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 6463 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq295602 Length=499 Score = 464 bits (514), Expect = 1e-126 Identities = 290/320 (91%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 15172 TCGCGGCGACACCTTTGCCACACGGGCTGAGGAGAAGCGCGCTGAGGCCGAAGNNNNNNN 15231 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCGCGGCGACACCTTTGCCACACGGGCTGAGGAGAAGCGCGCTGAGGCCGAAGCAGCGGC 240 Query 15232 NNNNNNNNNNNNNNNNNNNNNNCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGAT 15291 |||||||||||||||||||||||||||||||||||||| Sbjct 241 CGAAGCTGCCGCCCCCGCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGAT 300 Query 15292 CAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCAC 15351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCAC 360 Query 15352 CTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAAT 15411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAAT 420 Query 15412 CCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTG 15471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTG 480 Query 15472 GTCGTTGCCAGACATGATGC 15491 ||||||||||| |||||||| Sbjct 481 GTCGTTGCCAG-CATGATGC 499 >seq138774 Length=249 Score = 205 bits (226), Expect = 2e-48 Identities = 130/138 (94%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 11022 GGACGAGCCCCTTTTTT-GCTTTTCCCAGATGCATCCGGTGCTGCGGCAGATGCGCCCCC 11080 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 111 GGACGAGCCCCTTTTTTTGCTTTTCCCAGATGCATCCGGTGCTGCGGCAGATGCGCCCCC 170 Query 11081 CTCCTCAGCAGCGGCAAGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCCCTCCTC 11140 ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 171 CTC-TCAGCAGCGGCAAGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTC----CCTC 225 Query 11141 CTACCGCGTCAGGAGGGG 11158 |||||||||||||||| Sbjct 226 TCACCGCGTCAGGAGGGG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114296904086600