Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000010.1 Length=35524 Score E Sequences producing significant alignments: (Bits) Value seq272266 262 9e-66 seq256110 244 2e-60 seq213072 237 4e-58 seq295602 96.9 8e-16 >seq272266 Length=497 Score = 262 bits (290), Expect = 9e-66 Identities = 357/489 (73%), Gaps = 7/489 (1%) Strand=Plus/Plus Query 6345 ACCTCGCCTCGGAGGGGCTCGTTGGTCCAGCAGAGTCGACCCCCTTTTCTTGAACAGAAA 6404 ||||| || || ||| ||||||||||||||||||| || || || || | || ||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6405 ggggggagggggTCTAGCATGAGT-TCATCAGGGGGGTCTGCATCCATGGTGAATATTCC 6463 || || |||||||||||| || || || || ||||||||||| |||| ||| || | || Sbjct 64 GGCGGTAGGGGGTCTAGC-TGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6464 TGGGAGCAGATCTTTGTCAAAATAG-CTAATGTG-AGCGGGGTCA-TCCAAAGCCATCTG 6520 || ||||| ||| || ||| ||| || | | | | || | ||| ||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 182 Query 6521 CCATTCTCGAGCTGCCAGCGCGCGTTCATAGGGATTGAGTGGGGTGCCCCATGGCATGGG 6580 |||| | || || || |||||||| || || || |||||||||| |||||||||||||| Sbjct 183 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 242 Query 6581 GTGGGTGAGTGCAGAGGCATACATGCCACAGATGTCATAGACATACAGTGGTTCTTCGAG 6640 ||||||||| || ||||| |||||||| || ||||| || || | || || ||| ||| Sbjct 243 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAG 301 Query 6641 GATGCCGATGTAGGTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGTCATA 6700 || || | || || || || || | || || | |||||| || ||||| || || || Sbjct 302 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 361 Query 6701 GAGTTCATGCGAGGGGGCGAGAAGACCCGGGCCCAGATTGGTACGGTTGGGTTTTTCAGC 6760 ||||| |||||||| ||||| || | || || || ||| ||||| ||| | || || Sbjct 362 TAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 421 Query 6761 TCTGTAAACGATCTGGCGAAAGATGGCATGGGAATTGGAAGAGATGGTAGGTCTCTGAAA 6820 || | || | ||||| | ||||||||||| || ||||| || ||||| || | ||| || Sbjct 422 TC-GGAAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 480 Query 6821 GATGTTAAA 6829 || ||| || Sbjct 481 GACGTTGAA 489 >seq256110 Length=496 Score = 244 bits (270), Expect = 2e-60 Identities = 277/366 (76%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 11037 CTGGACTTGGAAGAGGGCGAGGGACTGGCGCGTCTGGGTGCACCATCGCCCGAGCGGCAC 11096 ||||||||||| ||||||||||| |||||||| || || || || || || ||||||||| Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 11097 CCGCGGGTGCAACTGAAAAAGGATTCTCGCGAGGCGTACGTGCCGCAGCAGAACCTGTTC 11156 || ||||||| ||||| ||| | || |||||||||||||||| |||||||||||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTT 248 Query 11157 AGGGACAG-GAGCGGTGAGGAGCCGGAGGAAATGCGAGCTTCCCGCTTTAACGCGGGTCG 11215 | ||| | ||| || |||||||| ||||| ||||| | | || |||| || || Sbjct 247 CGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCG 189 Query 11216 CGAGCTGCGTCATGGTCTGGACCGAAGACGGGTGCTGCGCGATGATGATTTTGAAGTCGA 11275 ||||||||| ||||| ||| | || ||| |||||||||| || || ||||| ||| Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGA 129 Query 11276 TGAAGTGACAGGGATAAGTCCTGCTAGGGCACATGTGGCTGCGGCCAACCTAGTATCAGC 11335 | || ||||| ||||| || | ||||| ||||| || ||| |||| ||| | || Sbjct 128 CGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGC 69 Query 11336 CTACGAGCAGACCGTGAAGGAGGAGCGCAACTTTCAAAAATCTTTCAACAATCATGTGCG 11395 ||||||||||| ||||| ||||| ||| |||||||| |||| ||||| || ||||| Sbjct 68 ATACGAGCAGACGGTGAACCAGGAGATTAAC-TTCAAAAAGCTTT-AACAACCACGTGCG 11 Query 11396 CACCCT 11401 || || Sbjct 10 TACGCT 5 >seq213072 Length=511 Score = 237 bits (262), Expect = 4e-58 Identities = 261/342 (76%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 6000 TCTGCACTCAGGTTGTCAGTTTCTAGGAACGAGGAGGATTTGATATTGACAGTGCCAGTT 6059 ||||| || || ||||||||||| | |||||||||||||||||||| || ||| | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6060 GAGATGCCTTTCATGAGACTCTCGTCCATTTGGTCAGAAAAGACAATTTTCTTGTTGTCA 6119 | ||||||||| | | | | ||||| |||||||||||| |||| || |||| |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6120 AGCTTGGTGGCAAAGGATCCGTATAGGGCATTGGATAAAAGCTTGGCGATGGAGCGCATG 6179 |||||||||||||| || ||||| ||||| ||||| | | ||||||||||||||||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6180 GTTTGGTTCTTATCCTTGTCCGCACGCTCCTTGGCAGCAATGTTGAGTTGGACGTACTCG 6239 |||||||| || | || || ||||||||||| || ||||| || || ||||| ||| Sbjct 352 GTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6240 CGCGCCAGGCACTTCCATTCAGGAAAGATGGTCGTCAGTTCATCTGGCACGATTCTGACT 6299 ||||| | |||| |||||| || |||| ||| || | || || ||||| | || Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6300 CGCCAGCCCCGATTATGCAGGGTGATTAGATCCACACTGGTG 6341 ||||| || || || |||||||||| || || || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq295602 Length=499 Score = 96.9 bits (106), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 15110 TACCGCAGCTGGTATCTGTCCTACAACTATGGCGACCCTGAAAAAGGAGTCCGTTCCTGG 15169 |||||||||||||| || | |||||||| ||||||||| | | ||| |||| || ||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 15170 ACACTGCTCACCACCTCGGATGTCACCTGTGGAGCAGAGCAGGTGTACTGGTCACTTCCA 15229 || ||||| ||| | || || ||||| || | |||||||| |||||||| | ||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCA 490 Query 15230 GACATGATGC 15239 | |||||||| Sbjct 491 G-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112978828368164