Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000011.1 Length=36519 Score E Sequences producing significant alignments: (Bits) Value seq272266 361 1e-95 seq213072 318 1e-82 seq256110 284 3e-72 seq295602 118 2e-22 >seq272266 Length=497 Score = 361 bits (400), Expect = 1e-95 Identities = 383/500 (77%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6348 ACCTCGCCGCGCAGGGGCTCATTAGTCCAGCAGAGGCGTCCGCCCTTGCGCGAGCAGAAg 6407 ||||| ||||| ||| |||| || |||||||||||||| |||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6408 gggggcagggggTCCAGCATGACCTCGTCgggggggTCGGCATCGATGGTGAAGATGCCG 6467 || || |||||||| ||| |||||| |||||||| || || | ||| |||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6468 GGCAGGAGGTCGGGGTCAAAGTAGCTGATG--GAAG--TGGCCAGATCGTCCAGGGCAGC 6523 ||||| ||| | ||| |||||| || | | | || || || || || Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAG----TCTAGCGCCTG 179 Query 6524 TTGCCATTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTGAGGGGCGTGCCCCAGGGCAT 6583 |||||| |||| |||| |||||||||||||| || |||| || | ||||| ||||| Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6584 GGGATGGGTAAGCGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTC 6643 ||| ||||| ||||||||||||||||||||||| |||||||| |||| ||||||||| Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6644 GAGGATGCCGATGTAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTC 6703 ||| || || | || || |||||||| | || ||||||||||||||||||||||| || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6704 ATACAGCTCGTGCGAGGGGGCGAGGAGCCCCGGGCCCAGGTTGGTGCGACTGGGCTTTTC 6763 || || ||||||||||| |||||||| | || || |||||| | || ||||| || Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6764 GGCGCGGTAGACGATCTGGCGGAAAATGGCATGCGAGTTGGAGGAGATGGTGGGCCTTTG 6823 || ||| || | ||||| | ||| |||||||| |||||||| || ||||| || | || Sbjct 419 TGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6824 GAAGATGTTGAAGTGGGCGT 6843 ||||| ||||||| ||||| Sbjct 478 GAAGACGTTGAAGCTGGCGT 497 >seq213072 Length=511 Score = 318 bits (352), Expect = 1e-82 Identities = 279/342 (82%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 6003 TCGGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGATATTGACGGTGCCGGCG 6062 || || || || ||||||||||| | ||||||||||||||||||||| || ||| ||| Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6063 GAGATGCCTTTCAAGAGCCCCTCGTCCATCTGGTCAGAAAAGACGATCTTTTTGTTGTCG 6122 | ||||||||| | | || | |||||||||||||||||| | |||||||||| ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6123 AGCTTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAGAGGAGCTTGGCGATGGAGCGCATG 6182 ||||||||||| || || ||||||||||||||||| || | ||||||||||||||||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6183 GTCTGGtttttttCCTTGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTCG 6242 || ||| ||||| | ||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 352 GTTTGG-TTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6243 CGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTCAGCTCGTCGGGCACGATTCTGACC 6302 ||||| |||||| |||||| |||||||||||||| ||||||||||||| | || Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6303 TGCCAGCCCCGATTATGCAGGGTGATGAGGTCCACACTGGTG 6344 |||| || || || |||||||||| ||||| || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 284 bits (314), Expect = 3e-72 Identities = 289/372 (78%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 10976 CAGCTGGCCTTGGAAGAGGGCGAGGGGCTGGCGCGCCTGGGGGCGTCGTCGCCGGAGCGG 11035 || |||| |||||| ||||||||||| |||||||| || || ||| | || || |||||| Sbjct 370 CACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGG 311 Query 11036 CACCCGCGCGTGCAGATGAAAAGGGACGCTCGCGAGGCCTACGTGCCCAAGCAGAACCTG 11095 ||||| | |||||| |||| | || | || ||||| |||||||| |||||||||| Sbjct 310 CACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTG 251 Query 11096 TTCAGAGACAG-GAGCGGCGAGGAGCCCGAGGAGATGCGCGCGGCCCG---GTTCCACGC 11151 || | ||| | ||| || |||||||||||||||||||| || || ||||||||| Sbjct 250 TTTCGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCG---GGATCGAAAGTTCCACGC 195 Query 11152 GGGGCGGGAGCTGCGGCGCGGCCTGGACCGAAAGAGGGTGCTGAGGGACGAGGATTTCGA 11211 ||||| |||||||||| |||||| | || || || ||||| | || ||||| || || Sbjct 194 AGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGA 135 Query 11212 GGCGGACGAGCTGACGGGGATCAGCCCCGCGCGCGCGCACGTGGCCGCGGCCAACCTGGT 11271 | | |||| || || ||||| || ||||||||||| |||||||| || ||| ||||||| Sbjct 134 GCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGT 75 Query 11272 CACGGCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAACCA 11331 || || ||||||||||| ||||| |||||| |||||| |||| ||| |||||||| Sbjct 74 AACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCA 17 Query 11332 CGTGCGCACCCT 11343 |||||| || || Sbjct 16 CGTGCGTACGCT 5 >seq295602 Length=499 Score = 118 bits (130), Expect = 2e-22 Identities = 105/130 (81%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 14979 TACCGCAGCTGGTACCTAGCCTACAACTATGGCGACCCCGAGAAGGGCGTGCGCTCCTGG 15038 ||||||||||||||||| || |||||||| |||||||| ||| || | ||||| ||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 15039 ACGCTGCTCACCACCTCGGACGTCACCTGCGGCGTGGAGCAAGTCTACTGGTCGCTGCCC 15098 || ||||| ||| | ||||| ||||||||| |||||| |||||||||||| |||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCA 490 Query 15099 GACATGATGC 15108 | |||||||| Sbjct 491 G-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116146667353294