Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq272266 830 0.0 seq256110 729 0.0 seq213072 580 3e-161 seq295602 428 1e-115 seq138774 210 5e-50 >seq272266 Length=497 Score = 830 bits (920), Expect = 0.0 Identities = 484/497 (97%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 6477 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 6536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6537 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCCGCGTCCACGGTAAAGATCCC 6596 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6597 GGGCAACAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAACGCCTGCTG 6656 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 182 Query 6657 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 6716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 242 Query 6717 GTGGGTGAGCGCGGAGGCGTACATGCCGCAGATGTCGTAAACGTAGAGGGGCTCCCTGAG 6776 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 243 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAG 301 Query 6777 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 6836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 361 Query 6837 TAGTTCGTGCGAGGGGGCGAGGAGTTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 6896 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 362 TAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 421 Query 6897 TCGGAAGACGATCTGCCTGAAGATGGCATGCGAGTTCGATGATATGGTTGGACGCTGGAA 6956 ||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 422 TCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 480 Query 6957 GACGTTGAAGCTGGCGT 6973 ||||||||||||||||| Sbjct 481 GACGTTGAAGCTGGCGT 497 >seq256110 Length=496 Score = 729 bits (808), Expect = 0.0 Identities = 472/502 (94%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 11106 AGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCCCTTCTCCTACCG-CGT-CAGGA 11163 ||||||||||||||||||| |||||||| |||| |||| | ||||||| ||| ||||| Sbjct 495 AGAGCAAGAGCAGCGGCAG-CATGCAGG-CACC-TCCCN--CGCCTACCGGCGTTCAGGA 441 Query 11164 GGGGCAACATCCG-CGGCTGACGCGGCGGCAG-ATGGTGATTACGAACCCCC-GCGGCGC 11220 ||||| ||||||| ||| ||||||| | |||| ||||||||||||||||||| ||||||| Sbjct 440 GGGGCGACATCCGGCGGTTGACGCG-CAGCAGGATGGTGATTACGAACCCCCCGCGGCGC 382 Query 11221 CGGGCCCGGCACTACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCC 11280 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 CGGGCCCGGCAC-ACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCC 323 Query 11281 TCTCCTGAGCGACACCCAAGGGTGCAGCTGAAGCGTGACACGCGCGAGGCGTACGTGCCG 11340 ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 322 TCTCCTGAGCGGCACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCG 263 Query 11341 CGGCAGAACCTGTTTCGTGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAG 11400 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 262 CGGCAGAACCTGTTTCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAG 203 Query 11401 TTCCATGCAGGGCGCGAGTTGCGGCATGGCCTGAACCGCGAGCGGTTGCTGCGCGAGGAG 11460 ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 202 TTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAG 143 Query 11461 GACTTTGAGCCCGACGCGCGGACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCC 11520 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 142 GACTTTGAGCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCC 83 Query 11521 GACCTGGTAACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTT 11580 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 82 GACCTGGTAACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTT--CAAAAAGCTTT 25 Query 11581 AACAACCACGTGCGCACGCTTG 11602 |||||||||||||| ||||||| Sbjct 24 AACAACCACGTGCGTACGCTTG 3 >seq213072 Length=511 Score = 580 bits (642), Expect = 3e-161 Identities = 338/344 (98%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 6131 CTTCTGCGCTAAGGTTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 6190 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 6191 CGGTGATGCCTTTGAGGGTGGCCGCGTCCATCTGGTCAGAAAAGACAATCTTTTTGTTGT 6250 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 232 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG-TGT 289 Query 6251 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 6310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 349 Query 6311 GGGTTTGGTTTTTGTCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 6370 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 GGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 408 Query 6371 CGCGCGCAACGCACCGCCATTCGGGAAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 6430 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 409 CGCGCGCAACGCACCGCCATTCGGG-AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 467 Query 6431 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 6474 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq295602 Length=499 Score = 428 bits (474), Expect = 1e-115 Identities = 288/329 (88%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 15182 TCGCGGCGACACCTTTGCCACACGGGCGGAGGAGAAGCGCGCTGAGGCCGAGGCNNNNNN 15241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 181 TCGCGGCGACACCTTTGCCACACGGGCTGAGGAGAAGCGCGCTGAGGCCGAAGCAGCGGC 240 Query 15242 NNNNNNNNNNNNNNNNNNNNNGGAGGCTGCACAACCCGAGGTCGAGAAGCCTCAGAAGAA 15301 ||||| ||||||||||||||||||||||||||||| Sbjct 241 CGAAGCTGCCGCCCCC---------GCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAA 291 Query 15302 ACCGGTGATTAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGTAA 15361 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 292 ACCGGTGATCAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAA 351 Query 15362 TGACAGCACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCA 15421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 TGACAGCACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCA 411 Query 15422 GGCCGGGATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCA 15481 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 GACCGGAATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCA 471 Query 15482 GGTATACTGGTCGTTGCCCGACATGATGC 15510 ||| |||||||||||||| | |||||||| Sbjct 472 GGTCTACTGGTCGTTGCCAG-CATGATGC 499 >seq138774 Length=249 Score = 210 bits (232), Expect = 5e-50 Identities = 132/138 (96%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 11031 GGACGAGCCCCTTTTTT-GCTTTTCCCAGATGCATCCGGTGCTGCGGCAGATGCGCCCCC 11089 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 111 GGACGAGCCCCTTTTTTTGCTTTTCCCAGATGCATCCGGTGCTGCGGCAGATGCGCCCCC 170 Query 11090 CTCCTCAGCAGCGGCAAGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCCCTTCTC 11149 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 171 CTC-TCAGCAGCGGCAAGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCC--TCTC 227 Query 11150 CTACCGCGTCAGGAGGGG 11167 |||||||||||||||| Sbjct 228 --ACCGCGTCAGGAGGGG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114497480826362