Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000018.1 Length=35514 Score E Sequences producing significant alignments: (Bits) Value seq213072 242 8e-60 seq256110 235 1e-57 seq272266 232 2e-56 >seq213072 Length=511 Score = 242 bits (268), Expect = 8e-60 Identities = 262/342 (77%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5978 TCTGCACTCAGGTTGTCAGTTTCTAGGAACGAGGAGGATTTGATATTGACAGTACCAGCA 6037 ||||| || || ||||||||||| | |||||||||||||||||||| || || || Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6038 GAGATGCCTTTCATAAGACTCTCGTCCATCTGGTCAGAAAACACAATCTTCTTGTTGTCC 6097 | ||||||||| | | | ||||||||||||||||| ||||||| |||| ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6098 AGCTTGGTAGCAAATGATCCATAGAGGGCATTGGATAGAAGCTTGGCGATGGAGCGCATG 6157 |||||||| ||||| || || |||||||| ||||| || | ||||||||||||||||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6158 GTTTGGTTCTTTTCCTTGTCCGCGCGCTCCTTGGCGGCGATGTTAAGCTGGACGTACTCG 6217 |||||||| ||| | || |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 352 GTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6218 CGCGCCACACATTTCCATTCAGGGAAGATGGTTGTCAGTTCATCCGGAACTATTCTGACT 6277 ||||| || || |||||| ||||||| ||| || | || || || || | || Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6278 CGCCATCCCCTATTGTGCAGGGTTATCAGATCCACACTGGTG 6319 ||||| || | ||||||||||| | || || || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 235 bits (260), Expect = 1e-57 Identities = 277/367 (75%), Gaps = 6/367 (2%) Strand=Plus/Minus Query 11249 CTGGAATTGGAAGAGGGCGAGGGACTGGCGCGCCTGGGCGCACCATCGCCCGAGCGGCAC 11308 ||||| ||||| ||||||||||| |||||||| || || || || || || ||||||||| Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 11309 CCGCGGGTGCAACTGAAAAAGGACTCTCGCGAGGCGTACGTGCCCCAGCAGAACCTGTTC 11368 || ||||||| ||||| || | || |||||||||||||| | |||||||||||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTT 248 Query 11369 AGGGACAG-GAGCGGTGAGGAGCCAGAGGAGATGCGAGCATCTCGA-TTTAACGCGGGTC 11426 | ||| | ||| || |||||||| ||||||||||| | ||| | || |||| || | Sbjct 247 CGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCG-GGATCGAAAGTTCCACGCAGGGC 190 Query 11427 GCGAGCTGCGCCACGGTCTGGATCGAAGACGGGTGCTGCAAGACGAGGATTTTGAGGTCG 11486 |||||||||| || || ||| |||| ||| |||||| || ||||| |||||| || Sbjct 189 GCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCG 130 Query 11487 ATGAAGTGACAGGGATCAGCCCAGCTAGGGCACATGTGGCCGCGGCCAACCTAGTCTCAG 11546 | | || ||||| || || || | ||||| ||||| || ||| |||| || | | Sbjct 129 ACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCG 70 Query 11547 CCTACGAGCAGACCGTGAAGGAGGAGCGCAACTTCCAAAAATCTTTTAACAACCATGTGC 11606 | ||||||||||| ||||| ||||| ||||| |||||| | ||||||||||| |||| Sbjct 69 CATACGAGCAGACGGTGAACCAGGAGATTAACTT-CAAAAAGC-TTTAACAACCACGTGC 12 Query 11607 GCACCCT 11613 | || || Sbjct 11 GTACGCT 5 >seq272266 Length=497 Score = 232 bits (256), Expect = 2e-56 Identities = 351/493 (71%), Gaps = 15/493 (3%) Strand=Plus/Plus Query 6323 ACCTCGCCTCGGAGGGGCTCATTGGTCCAGCAGAGTCGACCTCCTTTTCTTGAACAGAAA 6382 ||||| || || ||| |||| |||||||||||||| || || || || | || ||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6383 ggggggagggggTCTAGCATGAG-CTCATCAGGGGGGTCCGCATCTATGGTAAATATTCC 6441 || || |||||||||||| || | ||| || |||||||| || || | |||||| | || Sbjct 64 GGCGGTAGGGGGTCTAGC-TGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6442 CGGTAGCAAATCTTTGTCAAAATAGCTGATGGTGGTGGGATCATC-CAAG------GTCA 6494 || |||| ||| || ||| || || ||| | |||| | | Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGC----ATCCTTGCAAGTCTAGCGCCT 178 Query 6495 TCTGCCATTCTCGAACTGCCAGCGCGCGCTCATAGGGGTTAAGAGGGGTGCCCCAGGGCA 6554 ||||||| | || | || ||||||||||| || ||||| || |||| ||||| |||| Sbjct 179 GCTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCA 238 Query 6555 TGGGGTGGGTGAGCGCGGAGGCATACATGCCACAGATATCGTATACATAGAGGGGCTCTT 6614 |||||||||||||||||||||| |||||||| || || ||||| || | |||||||||| Sbjct 239 TGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTC 297 Query 6615 CGAGGATGCCGATGTAAGTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGT 6674 ||| || || | || || || || || | || || | |||||| || ||||| || | Sbjct 298 TGAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAAT 357 Query 6675 CATAGAGTTCATGTGAGGGGGCGAGAAGACCCGGGCCCAGATTGGTGCGGTTGGGTTTTT 6734 | || ||||| || ||||| ||||| || | || || || ||| | ||| ||| | | Sbjct 358 CGTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCT 417 Query 6735 CCGCCCTGTAAACGATCTGGCGAAAGATGGCATGGGAATTTGAAGAGATAGTAGGTCTCT 6794 | || | | || | ||||| | ||||||||||| || || || || || || || | || Sbjct 418 CTGCTC-GGAAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCT 476 Query 6795 GGAATATGTTAAA 6807 |||| | ||| || Sbjct 477 GGAAGACGTTGAA 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112946990790424