Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000019.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq213072 201 3e-47 seq256110 183 7e-42 >seq213072 Length=511 Score = 201 bits (222), Expect = 3e-47 Identities = 253/342 (74%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5994 TCTGCACTCAGGTTGTCAGTTTCTAAGAACGAGGAGGATTTGATATTGACAGTGCCGGTT 6053 ||||| || || ||||||||||| || |||||||||||||||||||| || ||| | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6054 GAGATGCCTTTCATGAGGTTTTCGTCCATTTGGTCAGAAAACACAAtttttttATTGTCA 6113 | ||||||||| | | | | ||||| ||||||||||| |||| ||||| ||||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAA-GCAATCTTTTT-GTGTCA 291 Query 6114 AGTTTGGTGGCAAATGATCCATACAGGGCGTTGGATAAAAGTTTGGCAATGGATCGCATG 6173 || ||||||||||| || || || ||||||||||| | | ||||| ||||| |||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6174 GTTTGGTTCTTTTCCTTGTCCGCGCGCTCTTTGGCGGCGATGTTGAGTTGGACATACTCG 6233 |||||||| ||| | || |||||||| ||||| |||||||| || || || || ||| Sbjct 352 GTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6234 CGTGCCAGGCACTTCCATTCGGGGAAGATAGTTGTTAATTCATCTGGCACGATTCTCACT 6293 || || | |||| |||||| ||||||| || || || || ||||| | ||| Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6294 TGCCACCCTCGATTATGCAAGGTAATTAAATCCACACTGGTG 6335 |||| || || || |||| ||| | | || || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 183 bits (202), Expect = 7e-42 Identities = 260/365 (71%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 10788 CTGGACTTGGAAGAGGGCGAAGGACTGGCACGTCTAGGTGCGCCTTCGCCCGAGCGGCAT 10847 ||||||||||| |||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 10848 CCGCGAGTTCAACTGAAAAAAGATTCTCGCGAGGCGTATGTGCCCCAACAGAACCTATTT 10907 || | || || ||||| ||| | || |||||||| ||||| | |||||||| ||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTT 248 Query 10908 AGAGACAGAAGCGGCGAGGAGCCGGAGGAGATGCGAGCTTCCCGCTTTAACGCGGGTCGT 10967 | ||| | || |||||||| ||||||||||| | | || |||| || || Sbjct 247 CGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGC 188 Query 10968 GAGCTGCGTCACGGTTTGGACCGAAGACGAGTGTTGCGAGACGAGGATTTCGAAGTTGAT 11027 |||||||| || || || | || || || |||| || ||||| || || || Sbjct 187 GAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGAC 128 Query 11028 GAAGTGACAGGGATCAGTCCTGCCAGGGCACACGTGGCTGCAGCCAACCTTGTATCGGCT 11087 | || ||||| ||||| || | ||||||||||| || ||| |||| ||| | || Sbjct 127 GCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCA 68 Query 11088 TACGAGCAGACAGTAAAGGAAGAGCGTAACTTCCAAAAGTCTTTTAATAATCATGTGCGA 11147 ||||||||||| || || | ||| ||||||| ||||| ||||| || || ||||| Sbjct 67 TACGAGCAGACGGTGAACCAGGAGATTAACTTCAAAAAG--CTTTAACAACCACGTGCGT 10 Query 11148 ACCCT 11152 || || Sbjct 9 ACGCT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110654685193144