Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= AC_000189.1 Length=34094 Score E Sequences producing significant alignments: (Bits) Value seq272266 235 1e-57 seq213072 174 3e-39 seq256110 116 8e-22 seq295602 102 2e-17 >seq272266 Length=497 Score = 235 bits (260), Expect = 1e-57 Identities = 357/502 (71%), Gaps = 15/502 (3%) Strand=Plus/Plus Query 6501 TACCTCGCCGCGGAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGGGAGCAGTA 6560 |||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||| | Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6561 GGGGGGCAGGACGTCCAGCTGGTCCTCGTCgggggggTCGGCGTCGATGGTGAAGAGGGC 6620 || || ||| ||| ||||| |||||| |||||||| ||||| | ||| |||| | Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6621 GGGCAGGAGGTCGGGGTCGAAGTAG-CTGAGGGGC-TCGGGGC-CGTCGAGGCGGTCCTG 6677 |||||| ||| | |||||||||| || || || || ||| || | ||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 182 Query 6678 CCAGCGGCGGGCGGCCAGGGCGCGGTCGAAGNNNNNNNNNNNTTGGCCGGCGGGGAAGGG 6737 ||| ||||||||| || ||||| ||| | | || || | ||| Sbjct 183 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 242 Query 6738 GTGGGTGAGGGCGCTGGCATACATGCCGCAGATGTCATAGACGTAGAGGGGCTCCCGCAG 6797 ||||||||| ||| ||| ||||||||||| ||||| || |||| ||||||||| | || Sbjct 243 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAG 301 Query 6798 GAGGCCGATGAAGTTGGGGTAGCAGCGGCCGCCGCGCAGGCTCTTCGCGGACGTAGTCAT 6857 | || | | | |||||||| | || ||||| | ||| |||| ||||| || | Sbjct 302 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCT-GGCGCGCACGTAATCGT 360 Query 6858 ACAGCTCGTGGGAGGGCGCGAGGAGGTTCGG-CCGAGGTGCGGCGCCTGGGGCCGGCTG- 6915 | || ||||| ||||| |||||||||| || ||||||| || |||| ||||| Sbjct 361 ATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGT----TGCTACGGGCGGGCTGC 416 Query 6916 ---GCGCGGTAGAGGAGCTGCTTGAAGATGGCGTGGGAGTTGGAGCTGATGGTGGGCCTC 6972 || ||| || | |||| |||||||||| || |||||||| ||||| || | | Sbjct 417 TCTGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGC 475 Query 6973 TGGAAGACATTGAAGGCGGCGT 6994 |||||||| |||||| ||||| Sbjct 476 TGGAAGACGTTGAAGCTGGCGT 497 >seq213072 Length=511 Score = 174 bits (192), Expect = 3e-39 Identities = 247/342 (72%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 6157 TCAGCGCTGAGGTTGTCTGTTTCTATGAAGGCGGAGGAGCGGACGGAGAGGTCGCCGCGG 6216 || ||||| || ||||| ||||| | || | |||||| || | | ||| | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6217 GCGATGGCTTCGGTGGTGCGGGCGTCCATCTGGCTGGCGAAGACCACCTTCTTATTGTCG 6276 | |||| ||| | |||| || ||||||||| | ||| | | ||| || | ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 6277 AGGCGTGTGGCGAAACTGCCGTAGAGGGCGTTGGAGAGAAGCTTGGCGATGCTGCGGAGC 6336 || ||||| || ||||||||||||||||| || | |||||||||| ||| || Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6337 GTTTGGTTTCTGTCCCGGTCGGCCTTTTCCTTGGCAGCGATGTTGAGCTGCACGTAGTCT 6396 ||||||||| || | || ||||| |||||||| |||||||| ||||||||||| || Sbjct 352 GTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6397 CGGGCGAGGCAGCGCCACTCGGGGAAGATGCTGTTGCGCTCGTCCGGCAGGAGGCGCACG 6456 || || | ||| ||||| || ||||||| | || |||||||||| |||| ||| ||||| Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6457 GCCCAGCCACGGTTGTGGAGGGTGACCACGTCCACGGAGGTG 6498 ||| || |||||||| |||||||| | ||| ||| |||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 116 bits (128), Expect = 8e-22 Identities = 238/353 (67%), Gaps = 19/353 (5%) Strand=Plus/Minus Query 10723 GCCTGGCGCGGCTGTCGGGCGCGGCGGCCCCCGAGCGGCACCCACGGGTGCAGCTCAAGC 10782 ||||||||||||| || ||| | | || |||||||||||| |||||||||| |||| Sbjct 345 GCCTGGCGCGGCTA---GGAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGCAGCTGAAGC 289 Query 10783 GAGAGGCCATGGAGGCCTATGTGCCGAGGCAGAATGCGTTCCGCGAGCGACCGGGGGAGG 10842 | || | ||||| || |||||| ||||||| ||| ||||| || ||| |||| Sbjct 288 GTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCGAGGGAGAGG 229 Query 10843 AGNNNNNNNNNATGAGGGACCTGCGGTTCCGCGCGGGGCGGGAGATGCAG------CTGG 10896 || ||| |||| | ||||| ||| ||||| ||| ||| | ||| Sbjct 228 AGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGA 169 Query 10897 ACCGGGAGCGAGTGCTCCAGCCCGAGGACTTTGAGGGGCGCGTGGAG-GAGGCGGGGGGA 10955 | || ||||| |||| | ||||||||||| || || | | || |||| Sbjct 168 ATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGA---GCCCGACGCGCGAACCGGG---- 116 Query 10956 GTGAGCGCGGCGCGGGCCCACATGAGCGCGGCCAGCCTGGCCCAGGCCTACGAGCAGACG 11015 | || | ||||| || ||| || || ||| ||||| || |||||||||||| Sbjct 115 ATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGACG 56 Query 11016 GTACGCGAGGAGGTCAACTTCCAAAAGACCTTCAACAACAACGTGCGCACCCT 11068 || | ||||| | |||||| ||||| ||| |||||| ||||||| || || Sbjct 55 GTGAACCAGGAGATTAACTTCAAAAAG--CTTTAACAACCACGTGCGTACGCT 5 >seq295602 Length=499 Score = 102 bits (112), Expect = 2e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 14593 CACCTTCACCTACTACCGCAGCTGGTACCTGGCCTACAACTACGGGGACCCGGCCACGGG 14652 |||||||||| | ||||||||||||||||| || ||||||||||| ||||| || || Sbjct 358 CACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGG 417 Query 14653 CACCGCCTCCCAGACGCTGCTGGTCTCCCCGGACGTAACCTGCGGAGTGGAGCAGGTCTA 14712 | | ||| ||| ||||| | | || |||||||||||||| |||||||||||| Sbjct 418 AATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTA 477 Query 14713 CTGG 14716 |||| Sbjct 478 CTGG 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108426054751344