Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001405.1 Length=35937 Score E Sequences producing significant alignments: (Bits) Value seq272266 872 0.0 seq256110 738 0.0 seq213072 583 2e-162 seq295602 495 8e-136 seq138774 210 5e-50 >seq272266 Length=497 Score = 872 bits (966), Expect = 0.0 Identities = 493/497 (99%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 6456 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAACAGAA 6515 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6516 TGGCGGTAGTGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 6575 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6576 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 6635 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTG 182 Query 6636 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 6695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGG 242 Query 6696 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGTAGAGGGGCTCTCTGAG 6755 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 243 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAG 301 Query 6756 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 6815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTA 361 Query 6816 TAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 6875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGC 421 Query 6876 TCGGAAGACTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 6935 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAA 480 Query 6936 GACGTTGAAGCTGGCGT 6952 ||||||||||||||||| Sbjct 481 GACGTTGAAGCTGGCGT 497 >seq256110 Length=496 Score = 738 bits (818), Expect = 0.0 Identities = 474/502 (94%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 11087 AGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCCCTTCTCCTACCG-CGT-CAGGA 11144 ||||||||||||||||||| |||||||| |||| |||| | ||||||| ||| ||||| Sbjct 495 AGAGCAAGAGCAGCGGCAG-CATGCAGG-CACC-TCCCN--CGCCTACCGGCGTTCAGGA 441 Query 11145 GGGGCAACATCCG-CGGCTGACGCGGCGGCAG-ATGGTGATTACGAACCCCC-GCGGCGC 11201 ||||| ||||||| ||| ||||||| | |||| ||||||||||||||||||| ||||||| Sbjct 440 GGGGCGACATCCGGCGGTTGACGCG-CAGCAGGATGGTGATTACGAACCCCCCGCGGCGC 382 Query 11202 CGGGCCCGGCACTACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCC 11261 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 CGGGCCCGGCAC-ACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCC 323 Query 11262 TCTCCTGAGCGACACCCAAGGGTGCAGCTGAAGCGTGACACGCGCGAGGCGTACGTGCCG 11321 ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 322 TCTCCTGAGCGGCACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCG 263 Query 11322 CGGCAGAACCTGTTTCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAG 11381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 CGGCAGAACCTGTTTCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAG 203 Query 11382 TTCCACGCAGGGCGCGAGTTGCGGCATGGCCTGAACCGCGAGCGGTTGCTGCGCGAGGAG 11441 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 202 TTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAG 143 Query 11442 GACTTTGAGCCCGACGCGCGGACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCC 11501 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 142 GACTTTGAGCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCC 83 Query 11502 GACCTGGTAACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTT 11561 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 82 GACCTGGTAACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTT--CAAAAAGCTTT 25 Query 11562 AACAACCACGTGCGCACGCTTG 11583 |||||||||||||| ||||||| Sbjct 24 AACAACCACGTGCGTACGCTTG 3 >seq213072 Length=511 Score = 583 bits (646), Expect = 2e-162 Identities = 339/344 (99%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 6110 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 6169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 6170 CGGTGATGCCTTTGAGGGTGGCCGCGTCCATCTGGTCAGAAAAGACAATCTTTTTGTTGT 6229 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 232 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG-TGT 289 Query 6230 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 6289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 349 Query 6290 GGGTTTGGTTTTTGTCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 6349 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 GGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 408 Query 6350 CGCGCGCAACGCACCGCCATTCGGGAAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 6409 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 409 CGCGCGCAACGCACCGCCATTCGGG-AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 467 Query 6410 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 6453 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq295602 Length=499 Score = 495 bits (548), Expect = 8e-136 Identities = 299/320 (93%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 15167 TCGCGGCGACACCTTTGCCACACGGGCGGAGGAGAAGCGCGCTGAGGCCNNNNNNNNNNN 15226 ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 TCGCGGCGACACCTTTGCCACACGGGCTGAGGAGAAGCGCGCTGAGGCCGAAGCAGCGGC 240 Query 15227 NNNNNNTGCCGCCCCCGCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGAT 15286 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGAAGCTGCCGCCCCCGCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGAT 300 Query 15287 CAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCAC 15346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCAC 360 Query 15347 CTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGGAT 15406 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 361 CTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAAT 420 Query 15407 CCGCTCATGGACCCTCCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTG 15466 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTG 480 Query 15467 GTCGTTGCCAGACATGATGC 15486 ||||||||||| |||||||| Sbjct 481 GTCGTTGCCAG-CATGATGC 499 >seq138774 Length=249 Score = 210 bits (232), Expect = 5e-50 Identities = 132/138 (96%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 11012 GGACGAGCCCCTTTTTT-GCTTTTCCCAGATGCATCCGGTGCTGCGGCAGATGCGCCCCC 11070 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 111 GGACGAGCCCCTTTTTTTGCTTTTCCCAGATGCATCCGGTGCTGCGGCAGATGCGCCCCC 170 Query 11071 CTCCTCAGCAGCGGCAAGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCCCTTCTC 11130 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 171 CTC-TCAGCAGCGGCAAGAGCAAGAGCAGCGGCAGACATGCAGGGCACCCTCCC--TCTC 227 Query 11131 CTACCGCGTCAGGAGGGG 11148 |||||||||||||||| Sbjct 228 --ACCGCGTCAGGAGGGG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114293720328826