Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq266300 776 0.0 seq300558 774 0.0 >seq266300 Length=503 Score = 776 bits (860), Expect = 0.0 Identities = 430/430 (100%), Gaps = 0/430 (0%) Strand=Plus/Minus Query 36965 ATCGATTTTATGAATATACAAATAATTGGAGCCAACCTGCAGGTGATGATTATCAGCCAG 37024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 ATCGATTTTATGAATATACAAATAATTGGAGCCAACCTGCAGGTGATGATTATCAGCCAG 376 Query 37025 CAGAGAATTAAGGAAAACAGACAGGTTTATTGAGCGCTTATCTTTCCCTTTATTTTTGCT 37084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 CAGAGAATTAAGGAAAACAGACAGGTTTATTGAGCGCTTATCTTTCCCTTTATTTTTGCT 316 Query 37085 GCGGTAAGTCGCATAAAAACCATTCTTCATAATTCAATCCATTTACTATGTTATGTTCTG 37144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 GCGGTAAGTCGCATAAAAACCATTCTTCATAATTCAATCCATTTACTATGTTATGTTCTG 256 Query 37145 AGGGGAGTGAAAATTCCCCTAATTCGATGAAGATTCTTGCTCAATTGTTATCAGCTATGC 37204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 AGGGGAGTGAAAATTCCCCTAATTCGATGAAGATTCTTGCTCAATTGTTATCAGCTATGC 196 Query 37205 GCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAA 37264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 GCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAA 136 Query 37265 CTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTG 37324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTG 76 Query 37325 GTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCC 37384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 GTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCC 16 Query 37385 CAAGTCTGGC 37394 |||||||||| Sbjct 15 CAAGTCTGGC 6 Score = 120 bits (132), Expect = 9e-23 Identities = 66/66 (100%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 29152 CGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAG 29211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 CGAATATTGGTTACGTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCGTAGCAG 444 Query 29212 TCGTTG 29217 |||||| Sbjct 443 TCGTTG 438 >seq300558 Length=1001 Score = 774 bits (858), Expect = 0.0 Identities = 431/432 (99%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 28722 TCAATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAAC 28781 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 TCGATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAAC 373 Query 28782 TCTTTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTA 28841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 TCTTTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTA 313 Query 28842 GGGGGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAG 28901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 GGGGGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAG 253 Query 28902 GCCACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTC 28961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GCCACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTC 193 Query 28962 TCTTCCATCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGT 29021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 TCTTCCATCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGT 133 Query 29022 TTCAAGGCTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGC 29081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 TTCAAGGCTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGC 73 Query 29082 AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAG 29141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 AAAGTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAG 13 Query 29142 TTCTTCAATTCG 29153 |||||||||||| Sbjct 12 TTCTTCAATTCG 1 Score = 185 bits (204), Expect = 3e-42 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 33243 CGTCGACGGCTTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAG 33302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 CGTCGACGGCTTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAG 645 Query 33303 TCTGGATAGCCATAAGTGTTTGATCCATTCTTTGGGACTCCT 33344 |||||||||||||||||||||||||||||||||||||||||| Sbjct 644 TCTGGATAGCCATAAGTGTTTGATCCATTCTTTGGGACTCCT 603 Score = 181 bits (200), Expect = 3e-41 Identities = 100/100 (100%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24414 AGTTACTACCGGATTTTGTAAAAACAGCCCTCCTCATATAAAAAGTATTCGTTCACTTCC 24473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 AGTTACTACCGGATTTTGTAAAAACAGCCCTCCTCATATAAAAAGTATTCGTTCACTTCC 563 Query 24474 GATAAGCGTCGTAATTTTCTATCTTTCATCATATTCTAGA 24513 |||||||||||||||||||||||||||||||||||||||| Sbjct 564 GATAAGCGTCGTAATTTTCTATCTTTCATCATATTCTAGA 603 Score = 179 bits (198), Expect = 1e-40 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 21227 AATTCGGCCTTTCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGC 21286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 AATTCGGCCTTTCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGC 942 Query 21287 TACGTCCTGATGCAGGGGCAGGCGTTTGACAAATCAGCC 21325 ||||||||||||||||||||||||||||||||||||||| Sbjct 941 TACGTCCTGATGCAGGGGCAGGCGTTTGACAAATCAGCC 903 Score = 178 bits (196), Expect = 4e-40 Identities = 125/138 (91%), Gaps = 5/138 (4%) Strand=Plus/Minus Query 17026 GACCGTGAAATCACGCTGCC--ATCCTC-CGGTACCGCGCTGATAAGCCTGGTTGACGGA 17082 |||||||||| | | ||| || || ||||||||||||||||||||||||||||||| Sbjct 832 GACCGTGAAAACGGCCCGCCGCATTCTGGCGGTACCGCGCTGATAAGCCTGGTTGACGGA 773 Query 17083 AGTGGCAATCCGGTCAGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTG 17142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 AGTGGCAATCCGGTCAGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTG 713 Query 17143 AGCCGTGTTCCT-GACGG 17159 |||||| ||| | ||||| Sbjct 712 AGCCGT-TTCGTCGACGG 696 Score = 176 bits (194), Expect = 1e-39 Identities = 99/100 (99%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 5505 GGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCACGCGTGCTGGCAGAAA 5564 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 902 GGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCACGCGTACTGGCAGAAA 843 Query 5565 CCCCCGGTATGACCGTGAAAACGGCCCGCCGCATTCTGGC 5604 |||||||||||||||||||||||||||||||||||||||| Sbjct 842 CCCCCGGTATGACCGTGAAAACGGCCCGCCGCATTCTGGC 803 Score = 140 bits (154), Expect = 1e-28 Identities = 82/84 (98%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 36890 AACTGAAGCTTTAGAGCGATTTATCTTCTGAACCAGACTCTTGTCATTTGTTTTGGTAAA 36949 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 AACT-AAGCTTTAGAGCGATTTATCTTCTGAACCAGACTCTTGTCATTTGTTTTGGTAAA 449 Query 36950 GAGAAAAGTTTTTCCATCGATTTT 36973 ||||||||||||||||||||| || Sbjct 448 GAGAAAAGTTTTTCCATCGATGTT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154297636759136