Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001454.1 Length=34214 Score E Sequences producing significant alignments: (Bits) Value seq213072 298 1e-76 seq256110 230 5e-56 seq272266 221 3e-53 >seq213072 Length=511 Score = 298 bits (330), Expect = 1e-76 Identities = 275/343 (80%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 5670 CTTCAGCACTTAGAGTGTCAGTTTCCACAAACGAGGTGGATTTGATATTTATCTGCCCTG 5729 |||| || || ||| |||||||||||| |||||||| |||||||||||| | ||| || | Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 5730 CGGCAATGCTTTTGATGGTGGCTGAATCCATTTGGTCAGAAAATACAAtttttttGTTAT 5789 ||| |||| ||||| |||||| | |||||| ||||||||||| |||| |||||| | | Sbjct 232 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAA-GCAATCTTTTTG-TGT 289 Query 5790 CAAGTTTGGTAGCAAAGGATCCATAGAGGGCGTTGGAGAGCAGTTTGGCAATGGAACGCA 5849 |||| ||||| ||||| || || |||||||||||||| |||| ||||| ||||| |||| Sbjct 290 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 349 Query 5850 GTGTTTGGtttttttCGCGGTCGGCACGCTCCTTGGCGGTGATATTAAGATGAACGTACT 5909 | |||||| ||||| |||| ||||| ||||||||||| | ||| || || || ||||| | Sbjct 350 GGGTTTGG-TTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 408 Query 5910 CTTTTGCCACGCAGCGCCACTCGGGAAAGACAGTGGCGCGCTCGTCGGGAAGCAACCGCA 5969 | || ||||| ||||| ||||| ||||| |||| |||||||||||| | || ||| Sbjct 409 CGCGCGCAACGCACCGCCATTCGGG-AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 467 Query 5970 CATGCCAGCCCCGGTTGTGCAGTGTTATAAGGTCCACACTGGT 6012 | |||| || ||||||||||| || | |||||| || ||||| Sbjct 468 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGT 510 >seq256110 Length=496 Score = 230 bits (254), Expect = 5e-56 Identities = 272/366 (74%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 10385 CCTGGACCTGGAAGAGGGCGAGGGGCTGGCCCGCTTGGGGGCGCCATCCCCCGAGCGCCA 10444 ||||||| |||| ||||||||||| ||||| || | || ||||| || || ||||| || Sbjct 368 CCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCA 309 Query 10445 TCCCCGCGTGCAACTTAAAAAGGACTCACGCCAGGCGTACGTACCGCCTCAGAATTTATT 10504 || | ||||| || || || | || |||||||||| |||| ||||| | || Sbjct 308 CCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTT 249 Query 10505 CAGGGATCGCAGCGGGCAGGAGCCCGAAGAGATGAGGGATCGCAGGTTTTACGCGGGGCA 10564 | || ||| || |||||||||| |||||| ||||||| | ||| |||| |||| Sbjct 248 TCGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCG 189 Query 10565 GGAGCTGCGGGCCGGTTTTAACCGCCAACGGGTGCTACGCGCCGAAGATTTTGAACCCGA 10624 ||||||||| || | || ||| | ||| |||| |||| || || ||||| ||||| Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGA 129 Query 10625 CGAACATAGCGGAATAAGTCCGGCACGGGCGCACGTGTCGGCGGCCGATTTGGTAACCGC 10684 || | | ||| || ||||| || || || |||||| |||| ||||| |||||||||| Sbjct 128 CGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGC 69 Query 10685 GTACGAGCAAACGGTGAACGAGGAGCGCAACTTTCAGAAAAGTTTTAACAATCACGTGCG 10744 |||||||| ||||||||| ||||| ||| |||| ||||| |||||||| |||||||| Sbjct 68 ATACGAGCAGACGGTGAACCAGGAGATTAAC-TTCA-AAAAGCTTTAACAACCACGTGCG 11 Query 10745 CACCCT 10750 || || Sbjct 10 TACGCT 5 >seq272266 Length=497 Score = 221 bits (244), Expect = 3e-53 Identities = 356/502 (71%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 6016 TACCTCGCCGCGCAGGGGCTCATTGGTCCAGCAAAGGCGCCCTCCTTTGCGCGAACAGAG 6075 |||||| ||||| ||| |||| ||||||||||| ||||| || || |||||||| |||| Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6076 TGGGGGCAAAACATCTAGTAGGTTTTCAGGTGGGGGGTCGGCGTCGATGGTAAAAATGCC 6135 ||| || | ||||| | | || |||||||| ||||| | |||||| | || Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6136 AGGCAGCAGG-GTGCGATTGAAATAATCAATGGGGGTACCAACTTGCAAA---AGAGCGT 6191 ||||||||| | ||| | ||| || || || | || |||||| || || | Sbjct 123 GGGCAGCAGGCGCGCG-TCGAAGTAGTCTATCTTGCATCC---TTGCAAGTCTAGCGCCT 178 Query 6192 GTTCCCAATCTCGGACCGCTAGGGCGCGCTCGTAGGGATTGAGTGGGAAGCCCCACGGCA 6251 | | ||| | ||| | || || ||||||||||| || ||||||||| ||||| |||| Sbjct 179 GCTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCA 238 Query 6252 TGGGATGGGTAAGTGCAGAGGCGTACATGCCACAGATGTCATAAACGTAAAGTGGTTCGC 6311 |||| ||||| || || |||||||||||||| || ||||| ||||||| || || || | Sbjct 239 TGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTC 297 Query 6312 GTAGCACCCCAATGTAAGTTGGATAACAGCGTCCTCCGCGAATGCTAGCCCGAACATAGT 6371 || | |||| || || || || || | ||| ||||| ||||| || || || || | Sbjct 298 TGAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAAT 357 Query 6372 CATACATTTCGTGGGAAGGGGCCAGCAAGCTGCCGCCTAGG-TCCGACCGCTGGGGTTTT 6430 | || | |||||| || || || || | | | || ||| | | || | ||| | | Sbjct 358 CGTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCT 417 Query 6431 ACTGTCCGGTACAAG--ATTTGACGAAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGCC 6488 ||| ||| ||| || || | |||||||| || |||||||| || ||||| || | Sbjct 418 -CTGCTCGG---AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGAC 473 Query 6489 GCTGAAAGACGTTAAAGCTGGC 6510 |||| |||||||| |||||||| Sbjct 474 GCTGGAAGACGTTGAAGCTGGC 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108808105684224