Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001460.1 Length=34125 Score E Sequences producing significant alignments: (Bits) Value seq256110 203 7e-48 seq272266 183 7e-42 seq213072 181 2e-41 seq295602 87.8 4e-13 >seq256110 Length=496 Score = 203 bits (224), Expect = 7e-48 Identities = 264/364 (73%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 10537 TGGAGTTGGAAGAAGGAGAAGGCATAGCCCGATTGGGCGCCCACTCTCCTGAGCGTCACC 10596 |||| ||||| || || || ||| | || || | || || | |||||||||||| |||| Sbjct 366 TGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACC 307 Query 10597 CAAGGGTGCAGCTCGCCCGGGACAGTCGCGTGGCATTTGTGCCTCGTCAGAACATGTTTC 10656 ||||||||||||| || || | || | ||| | ||||| || |||||| |||||| Sbjct 306 CAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTC 247 Query 10657 GCGACAACAGCGGGGAGGAAGCTGAGGAAATGCGAGACTGCAGGTTTAGGGCCGGTCGCG 10716 ||||| | || ||||| | ||||| ||||| || | | ||| || || |||| Sbjct 246 GCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCG 187 Query 10717 AGCTGCGCCGCGGATTTAATCGCGAGCGACTGCTGCGTGAGGAGGACTTTGAGCCAGATG 10776 ||||||| | || | ||||||||||| ||||||| ||||||||||||||||| || | Sbjct 186 AGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACG 127 Query 10777 AACATTCGGGGATTAGTTCTGCACGGGCCCATGTATCAGCAGCCAACTTAGTAACAGCAT 10836 | | ||||||||| | || || || || || | || ||| || | ||||| |||| Sbjct 126 CGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCAT 67 Query 10837 ATGAACAAACGGTTACAGAGGAACGTAACTTTCAAAAAAGCTTTAATAACCATGTGCGCA 10896 | || || ||||| | |||| |||||| |||||||||||| ||||| ||||| | Sbjct 66 ACGAGCAGACGGTGAACCAGGAGATTAACTT--CAAAAAGCTTTAACAACCACGTGCGTA 9 Query 10897 CACT 10900 | || Sbjct 8 CGCT 5 >seq272266 Length=497 Score = 183 bits (202), Expect = 7e-42 Identities = 338/491 (69%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 6219 TACTTCACCGCGCAAGCTTTCATTGGTCCAGGCTAAACGACCGCCTTTTCTAGAACAAAA 6278 ||| || ||||| | || || ||||||||| | || ||||| || | || || || Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6279 AGGAGGAAGAACATCCAACTGATTTTCATCTGGGGGGTCGGCATCTATAGTAAAAATGCC 6338 || || || || | ||| | || || |||||||| || || | ||||| | || Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6339 AGGACAAAGATTTTTGTCAAAATAATCAATTTTGCAAG--TGTAATTTTCCAGCGCCACC 6396 || || ||| || || || || ||||| || || | | |||||| | Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCT--AGCGCCTGC 180 Query 6397 TGCCATTGCCGCACGGCCAATGCCCGCTCATAGGGGTTAAGGGGAGGACCCCAAGGCATG 6456 |||||| || |||| | || ||||| || ||||| || || |||||||| |||||| Sbjct 181 TGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATG 240 Query 6457 GGGTGTGTGAGGGCCGATGCATACATGCCGCAAATATCATATACATATATGGGCTCTTTT 6516 ||||| ||||| || || || |||||||||||||| || || || | | ||||||| | Sbjct 241 GGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTG 299 Query 6517 AGTACTCCTATGTAAGTAGGATAGCACCTGCCGCCACGAATGCTGGCGCGAACGTAGTCA 6576 |||| ||| | || ||||| ||||| || || || || ||||||||||| ||||| || Sbjct 300 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCG 359 Query 6577 TATAGCTCATGTGAAGGCGCCAGGATGTTGGGCCCAAGATGTGTGCGCTGTGGTTTTTCG 6636 ||||| || || || || || |||| || ||| || || | | || || | || Sbjct 360 TATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCT 419 Query 6637 GCGCGGTACAAAATTTGTCTGAAAATTGCATGAGAGTTAGAGGAAATGGTAGGACGCTGA 6696 || ||| | || || ||||| || ||||| ||||| || || ||||| |||||||| Sbjct 420 GCTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGG 478 Query 6697 AACACATTAAA 6707 || || || || Sbjct 479 AAGACGTTGAA 489 >seq213072 Length=511 Score = 181 bits (200), Expect = 2e-41 Identities = 240/328 (73%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 5888 TGTCAGTTTCTATAAACGATGAGGATTTGATGTTTAATCGCCCCGCTGCAATTTCTTTCA 5947 |||||||||| | |||||| ||||||||||| || | | ||||| | || |||| | Sbjct 187 TGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCGGTGATGCCTTTGA 246 Query 5948 TTAGGCTTTCTTCCATTTGATCAGAAAAAACTAtttttttGTTATCTAGTTTGGTAGCAA 6007 | | ||||| || |||||||| | || ||||||| || || ||||| |||| Sbjct 247 GGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGTG-TCAAGCTTGGTGGCAA 304 Query 6008 AAGATCCGTACAAGGCATTGGAAAGCAGCTTGGCTATAGATCTTAGGGTTTGATTTTTGT 6067 | || ||||| | ||| ||||| |||| |||||| || || | |||||||| |||||| Sbjct 305 ACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTTTG- 363 Query 6068 CCCTATCGGCCCGTTCTTTTGCGGCAATATTGAGTTGCACATATTCGCGTGCCAGGCATT 6127 | | |||||| || || || || || || || || ||||| |||||||| || | ||| Sbjct 364 CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACC 423 Query 6128 TCCAGGTGGGGAAAATGGTGGTGCGCTCGTCAGATAGCAAGCGTAAGCGCCACCCGCGAT 6187 ||| | ||||| | ||||||||||||||| | | || | | | |||||| ||||| | Sbjct 424 GCCAT-TCGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACGCGCCAACCGCGGT 482 Query 6188 TATGCAGTGTAACCAGATCTACGCTGGT 6215 | ||||| || || || || |||||||| Sbjct 483 TGTGCAGGGTGACAAGGTCAACGCTGGT 510 >seq295602 Length=499 Score = 87.8 bits (96), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 14378 TATCGCAGCTGGTATTTGGCATACAACTACGGAGACCCAGAAAAAGGAGTTCGGTCATGG 14437 || ||||||||||| | |||||||||||||| ||||| | | ||| | || |||||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 14438 ACTCTACTAACAACTCCAGATGTAACAGGCGGCTCCGAACAGGTGTACTGGTC 14490 || || || ||||| || ||||| ||||||| || ||||| |||||||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTC 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108524751242338