Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5389 250 3e-61 seq3661 93.3 5e-14 seq1508 89.7 6e-13 seq300154 87.8 2e-12 seq300152 87.8 2e-12 seq3564 84.2 3e-11 >seq5389 Length=131951 Score = 250 bits (276), Expect = 3e-61 Identities = 806/1243 (65%), Gaps = 6/1243 (0%) Strand=Plus/Minus Query 53694 ACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 ||||||| | || || || ||||| || || ||||| ||||| | | | || | Sbjct 37489 ACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACT 37430 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 || ||||| ||||| || || || |||||||| || | || || || || |||| Sbjct 37429 CGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCT 37370 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTA 53873 | ||| || || ||||| || || ||| | ||||| || || || |||| || || | Sbjct 37369 TGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGA 37310 Query 53874 TAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCG 53932 | || || | ||| || | ||||| | | | || | | | | | | || Sbjct 37309 TGATGGCGTGCCACACCTGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCCGCCT-CG 37251 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 || || |||| |||||||| || ||||| | ||||| || || || || Sbjct 37250 TAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCG 37191 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | || ||||||| ||||| || || || ||| | ||||| || || || || Sbjct 37190 TTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGG 37131 Query 54053 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 54111 ||||| | || || || || || | || | || ||||| || || || ||||| || Sbjct 37130 ATCCACAT-GCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTCTTCTT 37072 Query 54112 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCC 54171 || || |||||| | | | || | ||||| || |||| ||| |||| | | || Sbjct 37071 CAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCC 37012 Query 54172 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 54231 || || ||||| || ||||| || | ||| | || ||||| || || || | || ||| Sbjct 37011 GGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCAT 36952 Query 54232 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 || | | || ||||| || ||||| |||| ||| ||||| || |||| || || Sbjct 36951 GGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCGGAT 36892 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 || | | | || || || || ||| || ||||| | ||||| | || | Sbjct 36891 GCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAG 36832 Query 54352 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 54411 ||| || ||||||||||| || || || ||| ||||| || || || ||||| | Sbjct 36831 CGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAG 36772 Query 54412 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471 || | || | || || || || || | || || || |||||||| ||||| || || Sbjct 36771 CTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTC 36712 Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 54531 || || || ||||||||||| | || | ||| || |||| | || || || || || Sbjct 36711 CGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGC 36652 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 || | ||| | ||||||||| || | || | | |||| ||| || ||||||| ||| Sbjct 36651 CACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCAGCAGGTA 36592 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || |||| || || || || || ||||||| || ||||| || ||| | || || Sbjct 36591 CGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGAT 36532 Query 54652 AACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAA 54710 | |||||||| ||||| | | | || | |||| || | ||| || || | Sbjct 36531 GGCGGAGTTGAGGCGGTCCTTGTTGTCCGTGACGATGTCCAGCGT-CTCCTTGGAGATCA 36473 Query 54711 TCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCAC 54770 | || || || || || || ||||| ||| | | | |||| |||||| || | Sbjct 36472 TGGGCGAGTGGCGGCCGTTGAGCGGGTTGACGTAGCTGTAGAGGTCCTCCATCACGTCGC 36413 Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830 | || | || || || || ||||| || || || ||||| || | ||||| || || Sbjct 36412 TGAACACCTTCTTGGTCTCCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCCAGGCAGG 36353 Query 54831 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATT 54890 | || || || || | || || ||||| | || ||||| | ||| ||||||| | Sbjct 36352 CGTAGTCGGGGTGCTTGGTGGTGAGCGTGGCCGTGATCTCGGCCGCCAGCGTGTCCAGCT 36293 Query 54891 CTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | ||||| || || || | || | || ||||| |||||||| Sbjct 36292 CCACCGTGGTCACGCCGCTGTACAGCCCCTGGATCACCTTCAT 36250 >seq3661 Length=2364936 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| || || || | ||| ||||| || || || ||||||||||| || | ||| | Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||| ||||| || ||||| || || |||||||| || || || || | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 24277 C 24277 | Sbjct 460723 C 460723 >seq1508 Length=1569309 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||||||||| | || ||||| | || || ||||| || || | ||| | Sbjct 108330 CCTCGTCTCTACTAATCAGCTCATTGGAGTGGGCCAGGCCAGGCATCAGCCCTCTCTTCT 108271 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||| ||||| || || || |||||||| ||||| ||||| ||||| | Sbjct 108270 TTAGCCAGAAGATGGAAGCAAAGGAACCCGAGAAGAAAATGCCTTCAACTGCTGCAAAAG 108211 Query 24277 CAATAAGTC 24285 | | || || Sbjct 108210 CGACAATTC 108202 >seq300154 Length=373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || || || | || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||| || || || ||||| ||||| |||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 24277 CAA 24279 ||| Sbjct 95 CAA 93 >seq300152 Length=362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || || || | || ||||| || || || ||||||||||| || | ||| | Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||| || || || ||||| ||||| |||||||| || || || || | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 24277 CAA 24279 ||| Sbjct 95 CAA 93 >seq3564 Length=3914096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| || || || ||||||||||| || | || || || || ||||| || Sbjct 3070142 ATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 3070083 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || || ||||| || || ||| ||||||| || || || ||||||| || || || Sbjct 3070082 TTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCCCGTCTCCGTCTGGGACTCGATGATG 3070023 Query 53879 GCTTTCCAGAC 53889 || | ||| || Sbjct 3070022 GCGTACCACAC 3070012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590549441970960