Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4011 123 3e-23 seq4813 100 3e-16 seq2008 84.2 3e-11 >seq4011 Length=3479432 Score = 123 bits (136), Expect = 3e-23 Identities = 193/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||| | |||||||||||||||||||||||||| | | |||||| ||||| ||||| Sbjct 661654 CCGTCCGGCCCCACCAAGAACTTCTCGAAGTTCCACGAGATGTCGTTCCGGCAGACTGGG 661713 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 |||| ||| || |||||| ||| ||| | | ||| ||| || ||| Sbjct 661714 CTCCAGATGATGCACTTCGGGTCGGTCATGAGGGAATTGGGGTCATCGGACGGGAACGGA 661773 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTGACCTCGCACTT 83304 || |||| || ||| |||| | || ||| || ||| | ||||| || || |||| Sbjct 661774 AGCTTCTCTTTCAGAAAGACGAACATCGAATGGGCATCTTTC-CCGTTCACATCCGACTT 661832 Query 83305 CTCGAAG-AGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 || |||| ||| || || || || ||||||||||| || ||||||||||||| ||| | Sbjct 661833 CT-GAAGCAGCTCGAACTTGGGTTCAAAGCCGTTCCCCGGGCGGACGTGCTTCAAGGAGG 661891 Query 83364 GCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || |||||| | |||| | ||| ||||| Sbjct 661892 CCAGGATCTCCTCGTTCTTGAGGTTCTCCTG 661922 >seq4813 Length=2386737 Score = 100 bits (110), Expect = 3e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194 || |||| ||||||||| |||||||||| |||||||| ||||| | || | |||| Sbjct 825046 CCGACCAGGAACTTCTCAAAGTTCCAGGAGACGTCGTTCCGGCATATGGGCGTCCAGATC 824987 Query 83195 ATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCT 83254 | | ||| |||||| || ||| | | | |||||| || ||||| ||| Sbjct 824986 AGGTGCTTGGGGTCCTGCATGAGGGAGTTGGGGTCGTCTTCGGGGTAGGGCAGCTTGTCT 824927 Query 83255 CGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGC 83314 ||| ||||||||| ||| |||| | || |||||||| ||||||||||| |||| Sbjct 824926 TTGAGGTAGGCGAAGACCGGGTGTGGGTTCGCTCCGTTGACTTCGCACTTCTCAAAGACG 824867 Query 83315 ATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCG 83374 | ||| || ||| |||| || || || || | |||||| ||| |||||||| Sbjct 824866 GTGAAGCCGGGTTCGTAGCCCGCGCCTGGTCGCACATACTTCAGCGAATTTAAGATCTCC 824807 Query 83375 GCATT 83379 |||| Sbjct 824806 CCATT 824802 >seq2008 Length=596790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 50477 ATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCAC--ACGCACTTCAACTGCTACGGCT 50534 ||||| || ||||||||||| ||||||| |||| | ||| | ||||||| |||| Sbjct 139529 ATGTTCCCCGAGCTCTTTACCCAGGAGAAC--GCACGGAAGCATTACAACTGCAGTGGCT 139586 Query 50535 CCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTATGTGCAG 50593 || |||||||| ||| ||| ||||| | ||| | | || |||||||||| || || Sbjct 139587 CCCTGGGCAAGAAGCA-GCTGGACCCCGTTCGCGTCAACCTGATCCGGCACTACGTCCAA 139645 Query 50594 TTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCGTGCCTG 50653 ||||| |||| ||| | ||||| || |||||||| |||| ||| || Sbjct 139646 CTGCTGTACCCTCAGGCCAGGAACGACCGGGTGTGGATGTTTGAGTTTGTGGGCAAGTTG 139705 Query 50654 GACGAGCGCTGCCGGCGCCGC 50674 |||||||| ||| || | ||| Sbjct 139706 GACGAGCGGTGCAGGAGACGC 139726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605544097627080