Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001876.1 Length=34446 Score E Sequences producing significant alignments: (Bits) Value seq256110 132 1e-26 seq272266 120 7e-23 seq213072 105 1e-18 >seq256110 Length=496 Score = 132 bits (146), Expect = 1e-26 Identities = 205/292 (70%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 10172 TGAAGCGCGATGCGGCGGAGGCGTACGTTCCCCGGGAGAACTTATTCCGCGACCGCAGCG 10231 ||||||| ||| || ||||||||||| || ||| ||||| | || ||||||||| | Sbjct 294 TGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCGAGG 235 Query 10232 GGGAGGAACCCGAAGGGAGCCGAGACCTAAAGTACAAGGCCGGTCGGCAGTTGCGCGCCG 10291 | ||||| ||||| | || || || | ||||| | | || || || || |||| | Sbjct 234 GAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATG 175 Query 10292 GCATGCCCCGAAAGCGGGTGCTGACCGAAGGGGACTTTGAGGTGGATGAGCGCACTGGCA 10351 || || || ||||| ||||| ||| | |||||||||| || | ||| || || | Sbjct 174 GCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGA 115 Query 10352 TCAGCTCAGCCAAAGCCCACATGGAGGCGGCCGATCTAGTGCGGGCTTACGAGCAAACGG 10411 | || | || || ||| ||| ||| ||||| || || || |||||||| |||| Sbjct 114 TTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGACGG 55 Query 10412 TGAAGCAAGAGGCTAATTTTCAAAAGTCATTTAATAACCACGTGCGGACACT 10463 |||| || ||| ||| || ||||| ||||| ||||||||||| || || Sbjct 54 TGAACCAGGAGATTAACTTCAAAAAG--CTTTAACAACCACGTGCGTACGCT 5 >seq272266 Length=497 Score = 120 bits (132), Expect = 7e-23 Identities = 328/494 (66%), Gaps = 14/494 (3%) Strand=Plus/Plus Query 6004 ACTTCCCCCCGTAGTGTCTCGTTGGTCCAGCAGAGGCGACCTCCTTTTCTGGAGCAGAAG 6063 || || || ||||| ||||||||||||||||||||| || || || | |||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6064 GGCGGTATAACGTCCAAGAATGCTTCTGGG--GGTGGGTCTGCATCAATGGTGAATATCG 6121 ||||||| ||| | ||| ||| | || |||||||| || | ||| || | | Sbjct 64 GGCGGTAGGGGGTCTAGC--TGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCC 121 Query 6122 CGGGCAGTAGG-GTGCGATCAAAATAGTCAAT---GGGTCTGTGCAACTGGGTTAGGCGG 6177 ||||||| ||| | ||| || || ||||| || | || ||||| | ||| Sbjct 122 CGGGCAGCAGGCGCGCG-TCGAAGTAGTCTATCTTGCATCCTTGCAAGTC---TAGCGCC 177 Query 6178 TCTTGCCAGTTTTTAATTGCAAGCGCTCGATCAAAGGGGTTCAAAGGTTTTCCCGCTGGG 6237 | ||||| |||||||| || || | ||||| | || ||| ||| Sbjct 178 TGCTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGC 237 Query 6238 AAAGGATGGGTGAGGGCGCTGGCATACATGCCGCAGATGTCATACACATAGATGGCTTCT 6297 | || |||||||| ||| ||| ||||||||||| ||||| || || | || || ||| Sbjct 238 ATGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCT 296 Query 6298 GTTAGGACGCCTATGTAGGTAGGATAGCATCGGCCGCCCCGAATACTTTCTCTAACGTAA 6357 | || | || | || ||||| ||||||| || || || || || | | |||||| Sbjct 297 CTGAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAA 356 Query 6358 TCATACATTTCATTGGAAGGGGCTAGTAGAAAGTTGCCCAGAGAGCTCCTGTTGGGACGC 6417 || || | ||| | || || || || || | || || ||| | | ||| || Sbjct 357 TCGTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGC 416 Query 6418 TGGGATCGGTAGACTACCTGTCTGAAGATGGCATGGGAATTGGAGCTGATGGTGGGCCTT 6477 | | |||| || ||| ||| |||||||||||||| || ||||| ||||| || | Sbjct 417 TCTGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGC 475 Query 6478 TGGAGGACATTGAA 6491 |||| ||| ||||| Sbjct 476 TGGAAGACGTTGAA 489 >seq213072 Length=511 Score = 105 bits (116), Expect = 1e-18 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 5743 TCCATTTGGTCAGAAAAGACAGTGACTCTGTTGTCTAGCTTAGTGGCAAAGCTGCCATAC 5802 ||||| |||||||||||| || | | ||| ||| ||||| |||||||| || || Sbjct 258 TCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCAAGCTTGGTGGCAAACGACCCGTAG 315 Query 5803 AGGGCATTGGACAGCAGTTTGGCAATGCTTCTGAGAGTTTGGTTTTTCTCTTTATCCGCC 5862 ||||| |||||||||| ||||| ||| | || ||||||||||| | ||| || Sbjct 316 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTTT-GCGCGATCGGCG 374 Query 5863 CTTTCCTTGGGCGCAATGTTAAGTTGCACGTAGTCTCTAGCCAGACACTCCCACTGGGGA 5922 | ||||||| ||| ||||| || |||||||| || | || | ||| ||| | ||| Sbjct 375 CGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGG- 433 Query 5923 AATACTGTGGTGCGGGGGTCGTTGAGAATTTGGACTCTCCAGCCGCGGTTATGAAGCGTG 5982 || || |||||||| |||| | | || || | ||| |||||||| || || ||| Sbjct 434 AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACGCGCCAACCGCGGTTGTGCAGGGTG 493 Query 5983 A 5983 | Sbjct 494 A 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109546737487792