Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq742 149 6e-31 seq92481 96.9 4e-15 seq56801 91.5 2e-13 seq3661 91.5 2e-13 >seq742 Length=2242023 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | | Sbjct 1678279 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 1678338 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||||||| | || || Sbjct 1678339 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 1678397 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 1678398 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 1678457 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| || |||| ||||||| ||| Sbjct 1678458 CATCCAGAAAGAATCCACCCTTCATCTTGTCCTGCGTCTGAGGGGAGGC 1678506 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || || ||| Sbjct 1675059 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 1675118 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | || || | ||||| || ||||| ||| | || ||| Sbjct 1675119 GACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1675178 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 1675179 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1675238 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || ||||| || | || ||||||| ||| Sbjct 1675239 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTTCGTCTGAGGGGTGGC 1675286 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||||||| | || ||||| | || |||| ||| ||||| |||||||| Sbjct 1667483 GACAAGGAAGGCATCCCCCCAGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAA 1667542 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| ||||||||||||||||| || | || || ||||| || | Sbjct 1667543 GATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCGACCCTCCATCTTGTCCTT 1667602 Query 40903 CGCTTGAGGGGCGG 40916 || ||||||| || Sbjct 1667603 CGTCTGAGGGGAGG 1667616 >seq92481 Length=981 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| || |||||| ||||||| || ||||||||||| || || Sbjct 313 GGTGGAGCGCTTCAGCCAGGAAGTTCAGGTGACCGAGGCCCGCTGCTTCTACGGTTTCCA 254 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | ||||| || ||||| Sbjct 253 GATCGCCATGGAGAACATCCACTCTGAGATGTA 221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| | || |||||| | || ||||| ||||||||||| || |||| || Sbjct 781 GAGCCTCTCCTGAGGGACAACCCCAGGCGATTCGTCATTTTCCCCATCCAGTACCACGAT 722 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| || || ||||| || |||||||| | ||| ||||| Sbjct 721 ATCTGGCAAATGTACAAGAAAGCAGAGGCCTCTTTCTGGACGGCCGAAGAGGT 669 >seq56801 Length=749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/117 (77%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 73583 CAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCG------AGAACGGAGTGCCCTACTG 73636 ||||||||||||||||||||| ||||| ||| | || ||| | |||||| Sbjct 422 CAACCACGCCGTGCTGCTGGTGGGCTATGGCCGCTGCCCCAAGTGCGGCCAGAACTACTG 481 Query 73637 GGTGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 |||| | ||||||| |||||||||| |||||||||||| |||| |||||| |||| Sbjct 482 GGTGGTGAAGAACAGCTGGGGCGACGGCTGGGGCGAGAAGGGCTTCTTCCGCATCCG 538 >seq3661 Length=2364936 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| |||| || |||||| ||||||| || ||||||||||| || || Sbjct 461138 GGTGGAGCGCTTCAGCAAGGAAGTTCAGGTGACCGAGGCCCGCTGCTTCTACGGTTTCCA 461079 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | ||||| || ||||| Sbjct 461078 GATCGCCATGGAGAACATCCACTCTGAGATGTA 461046 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| | || |||||| | || ||||| ||||||||||| || |||| || Sbjct 461748 GAGCCTCTCCTGAGGGACAACCCCAGGCGATTCGTCATTTTCCCCATCCAGTACCACGAT 461689 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| || || ||||| || |||||||| | ||| ||||| Sbjct 461688 ATCTGGCAAATGTACAAGAAAGCGGAGGCCTCTTTCTGGACGGCCGAAGAGGT 461636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||| || ||||| || || || || |||| || || ||| || ||| Sbjct 460738 GGTGAGCGAGTGGTCGCTTTCGCTGCTGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCC 460679 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | || || |||||||| ||||| ||| ||| || ||| Sbjct 460678 TCCATCTTCTGGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACCTTCTCCAATGAACTC 460619 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||||||||||| Sbjct 460618 ATCAGCAGGGACGAGG 460603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512466467537520