Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1337 259 3e-64 seq4243 244 7e-60 seq3866 127 1e-24 >seq1337 Length=858540 Score = 259 bits (286), Expect = 3e-64 Identities = 598/886 (67%), Gaps = 19/886 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || |||||| || |||| | |||| |||||||||||||| |||||| |||||||||| Sbjct 8364 CCTCTGAGTGTGGAGGAGCAAAACTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAA 8305 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 | || | ||||| || || |||| ||| | || || ||||| || |||||||| Sbjct 8304 GTGGAGATGTTTGAGCGACTCTTGCGTGCCATTTACCATCCACAGAATATCTACTGTGTG 8245 Query 107808 CACGTGGATGTGAAGTC--CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 || ||||| ||| || | ||| ||| ||| | || || || || ||| |||||| Sbjct 8244 CATGTGGACAAGAAATCTTCTCAG-GAC-TTCCTGCATGCTGTAAATGCAATTGTTTCCT 8187 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 | |||||||| || ||||| || || || |||| || | ||||| | | |||| Sbjct 8186 GTTTCCCCAACGTGTTCATAGCGAGCAAATTGGAAACGATTGTTTACGGAACGTGGTATC 8127 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | || || || || |||| || ||| ||||| |||| || | | || | ||||| | Sbjct 8126 GGGTCCAGGCCGATTTGAATTGCATGAAAGACCTGCTGCATAAACCTGTCCAGTGGAAAT 8067 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | || || || || ||| |||| |||| || || || ||||| |||||||| ||| Sbjct 8066 ACCTTCTCAACACGTGTGGGGCAGATCTCCCAATCAAAACTAATGCAGAGATGGTGATGG 8007 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG-AGGTACCTTCTGAGTCCaaa 108104 | || | | | | || || | ||| ||| ||||||||| || |||| | || |||| Sbjct 8006 CACTGCAAACGCTCAATGGAAGGAATAGTTTGGAGTCTGAAGCTACCAAC-GATGACAAA 7948 Query 108105 aaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATG 108164 || |||||||||| |||| | | ||| | ||| | | || || | | || Sbjct 7947 AAGGATCGCTGGAAGTACCATTTCAAAGTGTCCGACCAAATCATCCAGACAAATATCCTG 7888 Query 108165 AAGGACCCTCCCCCTGATAATTTACCC-ATGT-TCACAGGGAATGCCTATTTTGTGGCCT 108222 || ||| || ||| || | ||| |||| ||| || || || || ||||||| Sbjct 7887 AAAAGCCCCCCTCCT-ATCAGCACCCCTATGTATCA-GGGCAACGCTTACTTTGTGGTGA 7830 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | ||| ||||| |||||| | || |||| | || | | | | || |||| Sbjct 7829 CAAGAGAGTTTGTGAGACATGTGATTGAGGACCCAGAGATACAGACATTTCTGGAGTGGG 7770 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGC--TCCG 108338 || |||||||| ||||| ||||||||||| |||||||||||||| || ||| |||| Sbjct 7769 AGAAGGACACCTACAGCCCAGACGAACACCTGTGGGCCACCCTTCAACGAATGCCATCCG 7710 Query 108339 TGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATC 108398 |||| || || ||| | | ||||||| | || ||||||| | ||||| Sbjct 7709 ----TGCCCGGGTCACAGCCTCCCAATGACAAGTATGATGCGTCGGACATGAATTCCATC 7654 Query 108399 GCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCA 108458 || | || || |||||| |||| || || || || | | ||||| || ||||| Sbjct 7653 GCTCGCCTGGTGAAGTGGGGTTACCTGGAAGGGGACATCCGGAAAGGGGCTCCCTATGCT 7594 Query 108459 CCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGG 108518 |||||| || | ||| | || | || ||| | | |||| ||| ||||| ||||| Sbjct 7593 CCCTGCCGCGGCACCCACAGAAGATCTATTTGCCTGTTTGGGGTCGGTGACCTCCACTGG 7534 Query 108519 ATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC-GAGG 108563 | | || | || ||||| |||| ||||| |||||||| |||| Sbjct 7533 TTATTTCAACAGCAACACCTTATGGCGAACAAATTTGACCCAGAGG 7488 >seq4243 Length=3946 Score = 244 bits (270), Expect = 7e-60 Identities = 597/887 (67%), Gaps = 21/887 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || |||||| || |||| | |||| |||||||||||||| |||||| |||||||||| Sbjct 389 CCTCTGAGTGTGGAGGAGCAAAACTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAA 448 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 | || | ||||| || || |||| ||| | || || ||||| || |||||||| Sbjct 449 GTGGAGATGTTTGAGCGACTCTTGCGTGCCATTTACCATCCACAGAATATCTACTGTGTG 508 Query 107808 CACGTGGATGTGAAGTC--CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 || ||||| ||| || | ||| ||| ||| | || || | || ||| |||||| Sbjct 509 CATGTGGACAAGAAATCTTCTCAG-GAC-TTCCTGCATGCTGTAAGCGCAATTGTTTCCT 566 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 | || || || || ||||| || || || |||| | || ||||| | | |||| Sbjct 567 GTTTTCCGAACGTGTTCATAGCGAGCAAATTGGAAACAGTTGTTTACGGAACGTGGTATC 626 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | || || || || |||| || ||| ||||| |||| || | | || | ||||| | Sbjct 627 GGGTCCAGGCCGATTTGAATTGCATGAAAGACCTGCTGCATAAACCTGTCCAGTGGAAAT 686 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | || || || || ||| |||| |||| || || || ||||| |||||||| ||| Sbjct 687 ACCTGCTCAACACCTGTGGGGCAGATCTCCCAATCAAAACTAATGCAGAGATGGTGATGG 746 Query 108046 CCCT-CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG-AGGTACCTTCTGAGTCCaa 108103 | || |||| | | || || | ||| ||| ||||||||| || |||| | || | ||| Sbjct 747 CACTGCAAG-CGCTCAATGGAAGGAATAGTTTGGAGTCTGAAGCTACCAAC-GATTACAA 804 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 ||| ||||||||||| |||| | || ||| | ||| | | || || | | Sbjct 805 AAAGAATCGCTGGAAGTACCATTTCGAAGTGTCCGACCAAATCATCCAGACAAATGTCCT 864 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCC-ATGT-TCACAGGGAATGCCTATTTTGTGGCC 108221 ||| ||| || ||| || | ||| |||| ||| || || || || ||||||| Sbjct 865 GAAAAGCCCCCCTCCT-ATCAGCACCCCTATGTATCA-GGGCAACGCTTACTTTGTGGTG 922 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281 | ||| ||||| |||||| | || |||| | || | | | | || ||| Sbjct 923 ACAAGAGAGTTTGTGAGACATGTGATTGAGGACCCAGAGATACAGAAATTTCTGGAGTGG 982 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGC--TCC 108337 | || |||||||| ||||| ||||||||||| |||||||| ||||| || ||| ||| Sbjct 983 GAGAAGGACACCTACAGCCCAGACGAACACCTGTGGGCCACTCTTCAACGAATGCCATCC 1042 Query 108338 GTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCAT 108397 | |||| || || ||| | | ||||||| | || ||||||| | |||| Sbjct 1043 G----TGCCCGGGTCACAGCCTCCCAATGACAAGTATGATGCGTCGGACATGAATTCCAT 1098 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 ||| | || || |||||| | | || || || || | | ||||| || ||||| Sbjct 1099 CGCTCGCCTTGTGAAGTGGGGTTCCTTGGAAGGGGACATCCGGAAAGGGGCTCCCTATGC 1158 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 |||||| || ||||| | || | || ||| | | |||| ||| ||||| |||| Sbjct 1159 TCCCTGCCGCGGCATCCACAGAAGATCTATTTGCCTGTTTGGGGTCGGTGACCTCCACTG 1218 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC-GAGG 108563 | | | || | || ||||| |||| ||||| |||||||| |||| Sbjct 1219 GTTATTTCAACAGCAACACCTTATGGCGAACAAATTTGACCCAGAGG 1265 >seq3866 Length=1471978 Score = 127 bits (140), Expect = 1e-24 Identities = 236/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 |||| | |||||||||| ||||||||||| | || || ||||| ||| | ||||||| Sbjct 425599 AGATCCAGAACTTTGAACACCTGCTGCGAGCAATATACGCACCTCAAAACCTTTACTGTG 425540 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 |||| ||||| |||| | | | ||| || || |||| | ||| | || || Sbjct 425539 TCCATGTGGACAAGAAGGCTAGCTTGGCGTTCCTGGAAGCTGTCATGAGCATCACTTTCT 425480 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 | ||||| || |||||||||| ||| || ||||| |||||| |||| | | Sbjct 425479 GTTTCCCTAACGTCTTCATGGTCAGCCGACCCGTGGACGTGGTCTATGCCGGCTGGCCAA 425420 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCC--ATGGAA 107983 |||||||||| || | ||||| |||| ||| | || || | |||| || |||||| Sbjct 425419 GAGTGCAAGCGGATATCAACTGCATGGCTGACCT-CTTCA-ATGTCAGCACCAAATGGAA 425362 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| || | ||| || || ||||||||| | || ||||| |||||||| Sbjct 425361 GTATTTCATAAATCTGTGTGGTCAGGACTTCCCCTTGAAAACCAACCTGGAGATGGTGAG 425302 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 | ||| || ||| |||||||| ||||| |||||| | ||| Sbjct 425301 GAGCCTGAAAATGCTGAAGGGTGCCAACAGCATGGAGACGGAG 425259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346454574985398