Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5389 165 2e-35 >seq5389 Length=131951 Score = 165 bits (182), Expect = 2e-35 Identities = 393/594 (66%), Gaps = 9/594 (2%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | ||||| ||||||||| ||||| || || || || | |||||| Sbjct 36556 TACAACTTCTTCGGCTTCAAGACGCTGGAGCGCTCGTACCTGCTGAAGATCAACGGCAAG 36615 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | ||| || ||||||||| ||||| | ||||| || || || |||||| ||| Sbjct 36616 GTGGCGGAGCGGCCGCAGCACATGCTGATGAGGGTGGCGGTGGGCATCCACAAGAGGGAC 36675 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || || | |||||||||| | || || ||| | || || ||| | Sbjct 36676 ATCGACGCCGCCGTGGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACGCACGCCTCG 36735 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || ||||| ||||||||||| ||| | ||||| ||| ||||| || || ||| Sbjct 36736 CCCACGCTGTTCAACGCCGGCACCAACCGACCGCAGCTCAGCAGCTGCTTCCTGCTGGCC 36795 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCT 249117 ||| | |||||| |||| ||||| || |||||||| || ||| ||| || || Sbjct 36796 ATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGCTCATCTCC 36855 Query 249118 AAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATC 249177 || | |||||||| ||||| | | || | |||||| || | ||| |||||| Sbjct 36856 AAGTCGGCGGGCGGCATCGGCGTGGCGGTGAGCTGCATCCGCGCCACGGGGAGCTACATC 36915 Query 249178 AAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACC 249237 || || || || | | || | || ||| | || || | | ||| Sbjct 36916 GCCGGCACCAACGGCAACTCCAACGGCCTGGTGCCCATGCTGCGCGTGTACAACAACACG 36975 Query 249238 GCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTG 249291 || | | | | |||||| ||| ||||| ||| | ||||||||||| || Sbjct 36976 GCGCGCTACGTGGACCAGGGCGGCAACAAGCGCC---CCGGGGCCTTCGCCATGTACCTG 37032 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || ||||||||||| | || ||||||||||| |||| ||||||| ||||| ||| Sbjct 37033 GAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAG 37092 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 | | || || ||||| ||||||||| ||||| || ||||| |||||||| Sbjct 37093 GAGCAGCGCGCCCGCGACCTGTTCTACGGCATGTGGATCCCCGACCTGTTCATG 37146 Score = 104 bits (114), Expect = 5e-17 Identities = 287/436 (66%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 249568 GAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAG 249627 ||||| |||| ||||| || ||| || | | ||| ||||| |||||| |||| Sbjct 37312 GAGTCGCAGACGGAGACGGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACCGCAAG 37371 Query 249628 AGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAA 249687 || ||||| | | | || || |||| || || || || | ||| | || | Sbjct 37372 AGCAACCAGCAGAACCTGGGCTGCATCAAGTCCAGCAACCTGTGCACGGAGATCATCGAG 37431 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCAC 249747 ||| | | ||| ||| | ||||| ||||||||||| |||| ||| | | || Sbjct 37432 TACACCAGCGGGGACGAGGTCGCCGTGTGCAACCTGGCCTCCATCGCGCTCAACATGTAC 37491 Query 249748 GTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAAC--AGGCGA 249805 |||| ||| || | || ||||||||| || || || | ||| || ||| || Sbjct 37492 GTGACGGCCGAGCGCACCTTCGACTTCAAGAAGCT-----GGCCAGCGTCACCAAGGTGA 37546 Query 249806 TC---AAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGAATGCAGGT 249862 || || |||||||||||| | || || ||||| || ||||| | ||| || | Sbjct 37547 TCGTGAAGAACCTCAACAAGATCATCGAGGTCAACTTCTACCCGGTGCCGGAGGGCGAGA 37606 Query 249863 TGTCCAACATGAAGCACCGTCCATGTGGGC-TGGGCGTTCAGGCACTGCACGACGTCTAC 249921 ||| |||| | |||||| || | | ||| | ||||| |||| ||| ||||| || | Sbjct 37607 GGTCGAACAAGCGGCACCGGCC-TATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTC 37665 Query 249922 ATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTC 249981 || ||||| | | |||||||||| |||||| | || || | || || ||| Sbjct 37666 ATCCTGATGCGCTACCCCTTCGAGAGCCCGGAGGCCCAGCTCCTCAACAGGCACATCTTC 37725 Query 249982 GAGACCATCTATCACG 249997 ||||||||||| |||| Sbjct 37726 GAGACCATCTACCACG 37741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067886016627136