Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_002702.1 Length=32621 Score E Sequences producing significant alignments: (Bits) Value seq213072 145 2e-30 seq272266 132 1e-26 >seq213072 Length=511 Score = 145 bits (160), Expect = 2e-30 Identities = 239/337 (71%), Gaps = 6/337 (2%) Strand=Plus/Plus Query 5213 TCCGCGCTGAAATTGTCTGTCTCTATGAAGGATGAAGATTTGACAGAGTACTTGCCCCTG 5272 || ||||| | |||||| || || | || || || ||||||| | || |||| | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 5273 GAGATGTTCTTTGAGC-TCTCTTCCTCCAACTGGTCAGAAAACACTAtttttttGTTGTC 5331 | |||| ||||||| | | | |||| |||||||||||| | || ||||||| ||| Sbjct 234 GTGATGC-CTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTC 290 Query 5332 TAATCTGGTGGCGAACGATCCGTACAGTGCGTTTGATAAAAGTTTGGCAATGCTTCGCAT 5391 | ||||||| ||||| ||||| || ||||| || | | ||||| ||| |||| Sbjct 291 AAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAG 350 Query 5392 GGTTTGGTTCTTTTCCCTGTCTGCCTTTTCCTTTGCTGCGATGTTCAGCTGCACGTACTC 5451 ||||||||| ||| | | || || ||||| || |||||||| ||||||||||| || Sbjct 351 GGTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 409 Query 5452 TTTGGCCAAGCATTTCCATTCCGGGAAAATGGTAGTGCGTTCATCAGGCACAAGCCTCAC 5511 || | ||| ||||| |||||| | ||| ||||| || || ||||| || ||| Sbjct 410 GCGCGCAACGCACCGCCATT-CGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCAC 468 Query 5512 TCGCCAGCCTCGGTTGTGGAGCGTGATGACATCAACG 5548 ||||| || |||||||| || |||| | |||||| Sbjct 469 GCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACG 505 >seq272266 Length=497 Score = 132 bits (146), Expect = 1e-26 Identities = 314/472 (67%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 5574 GCTCGTTGGTCCAGCATAGTCGACCTCCCTTTCGCGAACAGAACGGAGGCAGGACGTCGA 5633 |||||||||||||||| || || || ||||| ||||| ||||| || || ||| ||| | Sbjct 20 GCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGTAGGGGGTCTA 79 Query 5634 GGAATGACTCATCCGGAGGGTCGGCGTCAATGGTGAAGATGCCTGGAAGAAGTTTCTCGT 5693 | | ||| ||||| ||||| ||||| | ||| |||| || || || || | ||| Sbjct 80 GCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGCAGGCGCGCGT 139 Query 5694 CAAAGTAGTCCATTTTTTGACCAACGGATTTCAGTTGATCCTCCCAGACGGCCACCGCGA 5753 | |||||||| || || || | | || | || ||| || | || | Sbjct 140 CGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGCGGGCGGCAA 199 Query 5754 GAGCCCTCTCAAATGGATTCAAGGGGCTTCCGGACGGCATCGGATGCGTCAAGGCGCTGG 5813 | || | ||| |||| || | ||| || | ||||| || || || | ||| || Sbjct 200 GCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCGCGGAGG 259 Query 5814 CGTACATTCCACAGATGTCATACACGTAGATGGGCTCGTGTAGAATTCCGATGTATGTGG 5873 ||||||| || || ||||| || |||| || |||||| || ||||| | ||||| | Sbjct 260 CGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAGTATTCCAAGATATGTAG 318 Query 5874 GATAGCATCGACCCCCTCGAATGCTCTGTCTCACGTAATCATACATCTCGTTGGAGGGGG 5933 | ||||||| || || || ||||| | ||||||||| || | |||| ||||| | Sbjct 319 GGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTATAGTTCGTGCGAGGGAG 378 Query 5934 CCAGAAGCACCTCCCCCAGGTGTTGTCTCTCCGGCTTTTCTGCTCGGTACAGAATTTGTT 5993 | || || | || |||| | | |||| ||||||||| | || || Sbjct 379 CGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGCTCGG-AAGCTATCTGCC 437 Query 5994 TGAAGATGGCGTGTGAGTTTGAGCTGATGGTAGGTCTCTGAAATATGTTGAA 6045 |||||||||| |||||||| || ||||| || | ||| || | |||||| Sbjct 438 TGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAAGACGTTGAA 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103736379550242