Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq742 100 2e-16 >seq742 Length=2242023 Score = 100 bits (110), Expect = 2e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || || |||||||| || ||||||||||| | | Sbjct 1675285 CCACCCCTCAGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1675226 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| || |||| || || || ||||| ||| Sbjct 1675225 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 1675166 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | | || || || | | | | ||||||| |||||| Sbjct 1675165 ATGCCTTCCTTGTCCTGGATCT-TAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCAC 1675107 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 |||| ||||||| | ||||| |||| ||||| ||||| || ||||| || |||| Sbjct 1675106 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATGGTTCAACT 1675050 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || || | ||||| || |||||||| || ||||||||||||| | Sbjct 1678505 CCTCCCCTCAGACGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1678446 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| || |||| || || || ||||| ||| Sbjct 1678445 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGG 1678386 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | ||| || | | | ||||| | ||||| Sbjct 1678385 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1678326 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTTA 18338 || | ||||||| | |||||||| | || || || || || ||||| || |||| ||| Sbjct 1678325 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGTTCAACT-TTA 1678267 Query 18339 TAAA 18342 ||| Sbjct 1678266 AAAA 1678263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377367895985115