Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5389 448 4e-121 seq3564 125 6e-24 seq742 111 1e-19 >seq5389 Length=131951 Score = 448 bits (496), Expect = 4e-121 Identities = 1038/1554 (67%), Gaps = 25/1554 (2%) Strand=Plus/Minus Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || ||||| || || | || | ||| ||| | |||| ||| | || |||| || Sbjct 38033 TGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGATGGAC 37974 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| ||||| || || || ||||| ||||| ||||||| ||| || | Sbjct 37973 TCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTG 37914 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || |||| ||||||||| | || || |||||||| | ||||||||| || |||| Sbjct 37913 TTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGCAGCTTCCAGTCCCAGAGGTCGGTG 37854 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || ||||| | ||||||| ||||| |||| ||| || || | |||| ||| | Sbjct 37853 GGGGTCAC---GCCCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAGCCCGGG 37797 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 ||||| |||||||| || ||| || | |||||||||| ||||| ||| ||| Sbjct 37796 TACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGCGTGG 37737 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA 22822 || || ||||||||||| | | |||| | ||| | ||| ||| | || Sbjct 37736 TAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGGGTAG 37677 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||||| | ||| ||||| |||| ||||| ||||| || ||||| || |||| | Sbjct 37676 CGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCCGC 37617 Query 22883 AGATTCGACACTTTTGCC-TCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 |||||| || | ||| || |||| || || | || ||||| | |||| | Sbjct 37616 TTGTTCGAC-CTCTCGCCCTCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTGAG 37558 Query 22942 GTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA--CGCCC 22996 ||| || |||| || || || | | |||||| | ||| | Sbjct 37557 GTT-CT--TCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCGCTC 37501 Query 22997 GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 | || || || |||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 37500 GGCCGTC--ACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCC 37443 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 | |||||||| | || || || || || ||||| |||| || ||||| || Sbjct 37442 CCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTC 37383 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 ||||||||| || || ||||| | ||||||||||||||||| |||||||||||||| Sbjct 37382 TGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCC 37323 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTACCT 23235 ||||||||||||||| || |||||| ||| || | || ||| ||| | | | Sbjct 37322 GTCTGCGACTCGATGATGGCGTGCCACACCTGCTGTGCCTTCACCACG-CGCTTGGCCTT 37264 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||| | ||||||| ||||| | ||||| || | || | || ||| |||| Sbjct 37263 GCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAG 37204 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 ||||| | | | || ||||| || ||| || || || | |||| Sbjct 37203 CCCGGGGCAGTCGTTGGGGCACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCAT 37144 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || || || || ||||| | |||||||||| |||||||||||| |||||| ||||| Sbjct 37143 GAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCC 37084 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 |||||||| |||| |||| || || || ||||| || ||||| ||||| ||||| | Sbjct 37083 CGTGTTCTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACAT 37024 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||| || || || || | ||| ||||||||||| || ||||| || |||||||||||||| Sbjct 37023 GGCGAAGGCCCCGGGGCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTA 36964 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGA 23592 ||| | ||||| ||||| || |||||||| |||| ||| || | ||| Sbjct 36963 CACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC-- 36906 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 || | || || | | | || | || ||||| || |||| || || || | Sbjct 36905 -CCCGTGGCGCGGATGCAGCTCACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAG 36847 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 |||||| || || || |||||||||||||||||||||||||| || || | || | || Sbjct 36846 CGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAG 36787 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||| || | |||| | | || |||| |||||| || || |||||| Sbjct 36786 GAAGCAGCTGCTGAGCTGCGGTCGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTG 36727 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGT-CCTCTC 23831 ||| || | | ||||| || |||||||| || | |||||| || |||| ||||| Sbjct 36726 CGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCCACGGCGGCGTCGATGTCCCTCT- 36668 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891 ||| || || | || || | ||||| ||||| || || | ||| || ||||| Sbjct 36667 TGTGGATGCCCACCGCCACCCTCATCAGCATGTGCTGCGGCCGCTCCGCCACCTTGCCGT 36608 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | || || | ||| || || || | || ||| || || || || ||| ||| |||| Sbjct 36607 TGATCTTCAGCAGGTACGAGCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGT 36548 Query 23952 CACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGT 24005 | || ||| | ||||| || || | |||| | ||| | | || ||||| Sbjct 36547 CGCGGTCGAAGATGATGGCGGAGTTGAGGCGGTCCTTGTTGTCCGTGACGATGT 36494 >seq3564 Length=3914096 Score = 125 bits (138), Expect = 6e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| ||| |||||||| || || || || || || ||||| ||||| || | Sbjct 3070171 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGG 3070112 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| | ||||||||||| ||||| |||| Sbjct 3070111 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCG 3070052 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||||| ||| ||||||||||| || ||||| Sbjct 3070051 TGCCCGTCTCCGTCTGGGACTCGATGATGGCGTACCACA 3070013 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || ||||| |||||||| | |||||||||| || | ||| ||| |||||| || Sbjct 3069619 CATGAAGAGATCTGGTATCCACATGCCGTAGAACAGGTCTCTGGCCCGCTGCTCCTCCTT 3069560 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||||||||||| |||| |||| || || ||||| || |||||||| ||||| || || Sbjct 3069559 ACCGGTGTTCTTCTTCAGCTCCAGGAACTCAAACACATCTGCATGCCAGGGCTCTAGATA 3069500 Query 23473 AACGGCAAACGCGCCCGGTCTCT 23495 | |||||| || || || |||| Sbjct 3069499 CATGGCAAAGGCTCCAGGCCTCT 3069477 >seq742 Length=2242023 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 1678275 AACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCC 1678334 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| |||| | || || | || ||||||||||||| | || || || Sbjct 1678335 TAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGA 1678394 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || ||||| ||||| ||| ||||||| || || ||| || Sbjct 1678395 TCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTA 1678454 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| || |||||||| || || | |||||||| || Sbjct 1678455 CAACATCCAGAAAGAATCCACCCTTCATCTTGTCCTGCGTCTGAGGGGAGG 1678505 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || || || ||||| ||||| || |||||| | || || || || Sbjct 1675055 AACCATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCC 1675114 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| || ||| | || ||||||||||||| | || || || Sbjct 1675115 CAGTGACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 1675174 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || ||||| ||||| ||| ||||||| || || || || Sbjct 1675175 TCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 1675234 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| || || ||||| || ||| | |||||||| || Sbjct 1675235 CAACATCCAGAAAGAATCCACCCTCCATCTTGTCCTTCGTCTGAGGGGTGG 1675285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || || |||||| | || || ||||| ||||| ||| |||| Sbjct 1667482 GGACAAGGAAGGCATCCCCCCAGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGA 1667541 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||||||||| || ||||| || || Sbjct 1667542 AGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCGACCCTCCATCTTGTCCT 1667601 Query 31405 TAGACTGAGGGGCGG 31419 | | |||||||| || Sbjct 1667602 TCGTCTGAGGGGAGG 1667616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443384742561840