Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_003266.2 Length=35994 Score E Sequences producing significant alignments: (Bits) Value seq272266 378 2e-100 seq213072 327 3e-85 seq256110 266 7e-67 seq295602 114 3e-21 >seq272266 Length=497 Score = 378 bits (418), Expect = 2e-100 Identities = 383/496 (77%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 6303 ACCTCGCCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAg 6362 ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6363 gggggcagggggTCCAGCATAAGCTCGTCgggggggTCAGCATCGATGGTGAAGATGCCT 6422 || || |||||||| ||| |||||| |||||||| || || | ||| |||| || Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6423 GGCAGGAGGTCGGGGTCGAAGTAGCTTATGCAGGTGCCCAGATCGTCCAGAGAAGCTTGC 6482 ||||| ||| | |||||||||| ||| | || | ||| || | ||| Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGC 183 Query 6483 CATTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTAAGGGGCGTGCCCCAGGGCATGGGG 6542 ||| |||| |||| |||||||||||||| || | || || | ||||| ||||||||| Sbjct 184 CATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGG 243 Query 6543 TGGGTGAGCGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCATCAAGG 6602 ||||||||||||||||||||||||||||| |||||||| |||| ||||||||| || Sbjct 244 TGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGAGT 302 Query 6603 ATGCCAATGTAGGTGGGGTAGCAGCGGCCCCCGCGGATGCTGGCGCGCACGTAGTCATAC 6662 || |||| || || |||||||| | || ||||||||||||||||||||||| || || Sbjct 303 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTAT 362 Query 6663 AACTCGTGCGAGGGGGCGAGGAGCCCGGCTCCGAGATTGGCGCGGCTGGGTTTTTCGGCG 6722 | ||||||||||| |||||||| ||| ||||| ||| ||| ||| | || || Sbjct 363 AGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGCT 422 Query 6723 CGGTAGACGATCTGACGGAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGTCTTTGGAAG 6782 ||| || | ||||| | ||||||||| || |||||||| || ||||| || | |||||| Sbjct 423 CGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAAG 481 Query 6783 ATGTTGAAGTGGGCGT 6798 | ||||||| ||||| Sbjct 482 ACGTTGAAGCTGGCGT 497 >seq213072 Length=511 Score = 327 bits (362), Expect = 3e-85 Identities = 281/342 (82%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5958 TCCGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGATATTGACGGTGCCGGCG 6017 || || || || ||||||||||| | ||||||||||||||||||||| || ||| ||| Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6018 GAGATGCCTTTCAAGAGCCCCTCGTCCATCTGGTCAGAAAAGACAATCTTTTTGTTGTCG 6077 | ||||||||| | | || | |||||||||||||||||| ||||||||||| |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG-TGTCA 291 Query 6078 AGTTTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAGAGGAGCTTGGCGATGGAGCGCATG 6137 || |||||||| || || ||||||||||||||||| || | ||||||||||||||||| | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6138 GTCTGGTTCTTTTCCTTGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTCG 6197 || ||||| ||| | ||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 352 GTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6198 CGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTTAGCTCGTCTGGCACGATTCTGACC 6257 ||||| |||||| |||||| |||||||||||||| ||||||| ||||| | || Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6258 TGCCAGCCCCGGTTATGCAGGGTGATGAGGTCAACGCTGGTG 6299 |||| || ||||| |||||||||| ||||||||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 266 bits (294), Expect = 7e-67 Identities = 282/368 (77%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 10922 ACCTGGCTTTGGAAGAGGGCGAGGGGCTGGCGCGCCTGGGGGCGTCGTCGCCGGAGCGGC 10981 |||||| ||||| ||||||||||| |||||||| || || ||| | || || ||||||| Sbjct 369 ACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGC 310 Query 10982 ACCCGCGCGTGCAGATGAAAAGGGACGCTCGCGAGGCCTACGTGCCCAAGCAGAACCTGT 11041 |||| | |||||| |||| | || | || ||||| |||||||| ||||||||||| Sbjct 309 ACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGT 250 Query 11042 TCAGAGACAG-GAGCGGCGAGGAGCCCGAGGAGATGCGCGCAGCCCGTTTCCACGCGGGG 11100 | | ||| | ||| || |||||||||||||||||||| | |||||||| ||| Sbjct 249 TTCGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGG 191 Query 11101 CGGGAGCTGCGGCGCGGCCTGGACAGAAAGAGGGTGCTGAGGGACGAGGATTTCGAGGCG 11160 || |||||||||| |||||| | | || || ||||| | || ||||| || ||| | Sbjct 190 CGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCC 131 Query 11161 GACGAGCTGACGGGGATCAGCCCTGCGCGCGCGCACGTGGCCGCGGCCAACCTGGTCACG 11220 |||| || || ||||| || || |||||||| |||||||| || ||| ||||||| || Sbjct 130 GACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACC 71 Query 11221 GCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAACCACGTG 11280 || ||||||||||| ||||| |||||| |||||| |||| ||| |||||||||||| Sbjct 70 GCATACGAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCACGTG 13 Query 11281 CGCACCCT 11288 || || || Sbjct 12 CGTACGCT 5 >seq295602 Length=499 Score = 114 bits (126), Expect = 3e-21 Identities = 104/130 (80%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 14913 TACCGCAGCTGGTACCTGGCCTACAACTATGGCGACCACGAGAAGGGCGTGCGCTCCTGG 14972 ||||||||||||||||| || |||||||| ||||||| ||| || | ||||| ||| Sbjct 371 TACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGG 430 Query 14973 ACGCTGCTCACCACCTCGGACGTCACCTGCGGCGTGGAGCAAGTCTACTGGTCGCTGCCC 15032 || ||||| ||| | ||||| ||||||||| |||||| |||||||||||| |||| Sbjct 431 ACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCA 490 Query 15033 GACATGATGC 15042 | |||||||| Sbjct 491 G-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114475194521944